RNA id: TU98961


Basic Information

Item Value
RNA id TU98961
length 2457
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G79357
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22007391 ~ 22010144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCTTTGTTTTGTAGTATGTGGTGTTTTTCATGAAATCATTTTGTAGAACTAAACAAATACTTGCAGTGTATCACATGTAATTCATTCAAGTGTTCTTAGCAATTAGTGCgaagtgaagaaaatgttttgacaaGGGATTTTTTAGTACAACTTAATAGTGTGTACCTAATAAGATGATGCAGCTGATGGCTTACATACATTCACTGTGAACTTTATTTAGGGTAGCTGTTGtaacagagaaaaaaagattagTTTATAGTTGATTGGagtttacatttcttttctacAGTGTATGTGACCAATTGGTGTGTTATTGCTTATTCACTTTTAATCTTGTCTAAAATCTTTACAAGATCACTTCCCAAAGGCATTGCACTATATTGGAATTATTTTATAGAATACCAGCCTTAATGAAAAACTGGAAATCCTGGAAACCAAGTTCCCTTCAGAGCATGTTTTTCCTTCCTAAAGCAAACTAAGCTAATCAATGTACAAGAAAAGTAAGCCAATTGTACATATCATTAAACTGcatgttttaatgattttttaaacaattttattgcttttgttggttttaaagaaaaaggtttCAGACTTGAAAACAATGCGTTTTGGGTATTTTGGTTAGTTGGTTACTAAAATCACCTGTTTGGTATAGAATTAGTGAAGGAAAAGAGACCCCTGTGCTTagaataaatgttgaaattaagaaaatatatagtataatacaaTATGATGTGTAGaccaaattaattatatattcaaattagcAAGAGGAtccacactttgtttttttccaaaaattgtgcatttaataaattcttagtaaaacaatttgtattgtttaaataaaatgacacctGAGGTATATTTTCAGTCATccccccaacaaaaaaaactactaaACTTAAATCTGGTACACATGCCAGGATTTTGTCACAACTAAgatgtaaaacaaatcaaaaagaaaaacaccaaacaaaacatgtttggcatttttcctataatCTTCCAGCCAATCTGTAAAGGTGGAGACTAGATTTAAGGTATAATATAGTAACTCTTCTCAGCACATTAAAGATGTTAAGGTCTTTTTGCCTGGATCCATGCAGGCTGCATCAATTGGAGAATTCAGTCTGTGTACTGCAGTCAGTAACTGGTTTGGACCCAGAGAAGTCTTTGGACAGCACTGCCTTGGCCAGGAGACTGAGTGTGGCTGAAATGTTGTGATTCACGGTTATCTGCTCCATCTGAAACTGTTCACAACTGGTCTTCTGCATGAGGGCTCTACTCATCTCACCCACTTGCTCCGTCAGCTTTCCTATCTGATGGGCCAGTAAACCAACCTGGTTGCCAAGCGAAATGAAATTAGGGTTGTTATCCTGCTCGTCAAAGTTGAGGCCCTTAAACACTGCGTCACTGGGCTGTGGCGTATACAGAAACTCAGGTTGTGGTTCCTTTTTCACCTGCACGGTGCCGGTGTCAAGGCTCTGCTGCTGATGCTGTTGCTCTGGAAGTTGTGTGCTTGGAGTGTACGGGAGGGAGCAGGGGACAGAGGTGAAGGGTGGGCCCACGATCCGGGGAGTTTCTGAGACTCTGAATTCCTCCACATAAGAAGGGTGCCCTTGGGGTGGCAGTACCAGCAACGGTCCTTGCGGGGTTTCTTCTGCTTCTTGCTTTGGCTCAGCAGGTGGAAGACGTTCTTGCGCTGTACAAAAGCAAGGAGAAATAAGAAATGTGAATATTACCACAGAAATGTTCATTGGCTAAAACTCATGCTTCACAAATCCCAAATGGGATTAAACATTACcaagaaacaaatgcaatggAAAAtgctaTACTGAATGGAAATGACAAAGCATCTGCTTGTGAGCCAGCTATAGAACAGAAAGTTTCACACTTCTACCCACATCTAGTGTATATCATCTTTAATAGTTTACATTATCTAGTTCTTGCTTTTTGATAgttcaaaattgtatttaaataaaacatcagcGGGTGGTTGAGACATCTAATGAAtattattagatttatttttacattctgTGCAACATCACACAATTGCATCAGTCTCTTCAACCACTTATGCAATGCAATTATGTAGGGGTAGAAAGAGTATATTTACCTTCACGTGCACTGGAATCTCCATGTAATGTTTCTTCAGATTCAGTTCCACTTACATTCTCTaagtaacaacaaaataacagtaTATTCAGAAAATGGCTACTAATGGAAGAAATTGCTTGCACATATTCAGTTATTAATTTCCCTACTAAATTAATCTTCAAGTTAAGTTTAGCATGTATTTAAACAACTTTCTTTCTCTATAGCTATGCATCTACATTAAAACACTACTTAAGACACACTAATGAATAATTACTCATTGAGGAGACTTCAAAGAGAActtcaaaaaacattaaatattattttaaaaaattacaattatctAGAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98959 lncRNA upstream 4726 22002343 ~ 22002665 (+) True G79355
TU98862 lncRNA upstream 374515 21629158 ~ 21632876 (+) True G79272
TU98849 lncRNA upstream 474794 21531677 ~ 21532597 (+) True G79259
TU98755 lncRNA upstream 933317 21073536 ~ 21074074 (+) True G79190
TU98738 lncRNA upstream 954815 21050816 ~ 21052576 (+) True G79178
TU98989 lncRNA downstream 34489 22044633 ~ 22045794 (+) True G79380
TU99005 lncRNA downstream 59279 22069423 ~ 22071493 (+) True G79394
TU99026 lncRNA downstream 224871 22235015 ~ 22235264 (+) True G79414
TU99027 lncRNA downstream 239487 22249631 ~ 22249832 (+) True G79415
TU99032 lncRNA downstream 347825 22357969 ~ 22361963 (+) True G79420
AMCG00010261 mRNA upstream 121253 21880507 ~ 21886138 (+) True AMCG00010261
AMCG00010258 mRNA upstream 166488 21831125 ~ 21840903 (+) True AMCG00010258
AMCG00010260 mRNA upstream 181052 21791529 ~ 21826339 (+) True AMCG00010260
AMCG00010259 mRNA upstream 251033 21747041 ~ 21756358 (+) True AMCG00010259
AMCG00010254 mRNA upstream 261172 21740774 ~ 21746219 (+) True AMCG00010254
AMCG00010266 mRNA downstream 7540 22017684 ~ 22020958 (+) True AMCG00010266
AMCG00010272 mRNA downstream 69144 22079288 ~ 22096930 (+) True AMCG00010272
AMCG00010278 mRNA downstream 519986 22530130 ~ 22541832 (+) True AMCG00010278
AMCG00010279 mRNA downstream 640885 22651029 ~ 22694955 (+) True AMCG00010279
AMCG00010281 mRNA downstream 885776 22895920 ~ 22917724 (+) True AMCG00010281
TU98308 other upstream 2867744 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 2919637 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 3085947 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 4653903 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 4729393 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 35974 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 347825 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 347825 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 689598 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 689665 22699809 ~ 22703409 (+) False G79475

Expression Profile