RNA id: TU99038



Basic Information


Item Value
RNA id TU99038
length 538
RNA type TUCP
GC content 0.54
exon number 5
gene id G79420
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22357969 ~ 22378809 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCAGCCAACAGGTTTGTACTCGTTTTTTtggggtgtttattttttatatacatttactcCCGAGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGGGAAACCTTTTTTCTTCTGAGCGACCTCCTCTTCTGGTTTGGGCACAATTTGCTCCTTCTCAGTGAGGATCATCTCAATGTGGCAGGGAGAGCTCATGTATGGGTTAATGCGGCCATGGGCACGGTATGTGCGCCTGCGCATCTTGGGCGCTTTGTTAACCTGGATGTGCTCAATCACCAAAGAATCCACATCAAGACCCTGCTTGAGCTCAGCATTGCTCTCGGCGTTCTTGAGCATGTGGAGGAGGAACTCCGCACTCTTCTTTGGCCAGCGCCCCTGTGTCCAGCCCCACTGCTTAGCCTGGCACACCTGCCGACTCCACCGTTGTACCGGCGGAAGGGGACGCACTGCCGCTTCACCACCACATCCTTCAGGTACTTGGAGGCCTTGCGGATGTGCATGCCCTTGATGGCCTGGGCCGTCTCACGGGTATCAAGGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU99027 lncRNA upstream 108137 22249631 ~ 22249832 (+) True G79415
TU99026 lncRNA upstream 122705 22235015 ~ 22235264 (+) True G79414
TU99005 lncRNA upstream 286476 22069423 ~ 22071493 (+) True G79394
TU98989 lncRNA upstream 312175 22044633 ~ 22045794 (+) True G79380
TU98961 lncRNA upstream 347825 22007391 ~ 22010144 (+) True G79357
TU99046 lncRNA downstream 954 22379763 ~ 22384132 (+) True G79427
TU99066 lncRNA downstream 96628 22475437 ~ 22475983 (+) True G79443
TU99124 lncRNA downstream 320933 22699742 ~ 22703043 (+) False G79475
TU99127 lncRNA downstream 325980 22704789 ~ 22705108 (+) True G79476
TU99165 lncRNA downstream 709288 23088097 ~ 23088362 (+) True G79508
AMCG00010272 mRNA upstream 261039 22079288 ~ 22096930 (+) True AMCG00010272
AMCG00010266 mRNA upstream 337011 22017684 ~ 22020958 (+) True AMCG00010266
AMCG00010261 mRNA upstream 471831 21880507 ~ 21886138 (+) True AMCG00010261
AMCG00010258 mRNA upstream 517066 21831125 ~ 21840903 (+) True AMCG00010258
AMCG00010260 mRNA upstream 531630 21791529 ~ 21826339 (+) True AMCG00010260
AMCG00010278 mRNA downstream 151321 22530130 ~ 22541832 (+) True AMCG00010278
AMCG00010279 mRNA downstream 272220 22651029 ~ 22694955 (+) True AMCG00010279
AMCG00010281 mRNA downstream 517111 22895920 ~ 22917724 (+) True AMCG00010281
AMCG00010283 mRNA downstream 626435 23005244 ~ 23044243 (+) True AMCG00010283
AMCG00010282 mRNA downstream 678811 23057620 ~ 23076233 (+) True AMCG00010282
TU98991 other upstream 310427 22046118 ~ 22047542 (+) True G79382
TU98308 other upstream 3218322 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 3270215 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 3436525 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 5004481 17344419 ~ 17353488 (+) True G78410
TU99122 other downstream 320933 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 321000 22699809 ~ 22703409 (+) False G79475
TU99599 other downstream 2454300 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 3613749 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 3633675 26012484 ~ 26026303 (+) True G80014

Expression Profile