RNA id: TU99046


Basic Information

Item Value
RNA id TU99046
length 4370
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G79427
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22379763 ~ 22384132 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATGgtaagatattttaatttcaggagTGCCCCAGTCACATGTTTATAATACAGTAATTGCATAAATAGTGTACATTTATGTTCACAAAtgcttaaaaagtaaaataaaaacacatacaaatgaaaCAGGCTTTTGAGCCACAAATATTCTGAAGAACAATTTACTTAATAGGCACTTGGCTGAAACAATTCTCtttgtaatttgattttgatcattttagctacttttaaaatgtaagtggagAACATTGCTTTCATGTTTCTACTGAACTATCATCTGAAGACCTTgctctgacattttatttggcGCACTTCGCAAACACACCCTGGACCGAAATGCCACTGTTTCTTACAGCCGCTGCCCTCCTGCAGGGCTGTGCACGTGCCTGCCTTggccttttaaaaatgattgaatgCACCTGTccacaataacaagcacagaGATTCATTTAACCAAACCATTTGCCACTTTTGGACTCTATTCTTAGAAAcacgtttttgttttctgtttctcaaTTTTGTTTCTCAGCAACAATGTTACTCCTCTTGGGCCTGCTAATTTAAGTTTGACCTTCGTCCAAGAACTAGAGGAAGTCATCTTTTGGTGGTGGTGTGCAATGATACCACCATACCATTGTTATTCCCAGTACGCaggattgttttaaaatgaatggtgaCCTGGATAACAGGATACAAATCATGTACTATTGAACGGCCCAAAGCACTGGAGCCAGATGATGCTGCTCTAGAACAGAGGTCTACAACCCTGGTGCTGCAGGATTTTAATATAGATTTACATTGTCCTTTACTGAAGACACTTTAACTTGTAACAATTAAGTACATAATCATCCAATGTAAGTCCTGAAGAGCAACCTTGTAGCTCTACACAAGGGTTACAGACCCCTGTTCTAGAACACAACCACATGTATGAGTGAGATAACAGACAGCAACACAGTACATCAGTAACGAAAGTCAGATAATAGTTTATTTGGATTtggtgctttttcttttctttattgtcTTTCGGTGTGGTGTAGTGAAATTGTCACATcagctataaaaaaaatagcaatataCAGTTCTGCAACTGAGCATGTGACCCATGCATAACATTGTATGGTTATTAATGCTTAATGGAATTGATTACAGCTGGATTTAAACGTGTCaatccctttttaaaaaaataaagatattatatacaaattttacattagtttttttttcatacacacTTAACATACTGTTTAGAACTTGACTTTTCTTTCCTctatggaaaataataacagaaaacaaaaccagacagacaaacaaacaaaaacaaaaaaaacatctaccaTCCCAGAACTCCTCTCAATCTCACAATTAAGATATCAGCTGACAAAAAGGATGATGAACCTTGAAAAGTAATCCCCAAGAGCTCTTTAAAAAGAGGAGGGTGGGGATTACAGGTTTGAAATGGTGCCCTCTATGTCCTGAAACACAAAGCAACCgccaatacaaaaaacaaaacaacaactgaagcAGTTGCACTGCAATTAACCCAATCATCCAAACACTTGTCTTCTTGTGCCTGTTTGTCTGTGGGTTCCATCTGGCCAACACAGCATGCCCTTGGCTGGCTGGGCCCTTATAAAAGGCTACTAAAGGAAACGGCCATGGTAATTGTTCTTAACCCAAAAAACgggcatcaattacaaaacattaattatctGAGAAACGATTTGAGATAAAGACATGCTGAGATTCCGaggtttgtttacatcgcgtacatcctggttttagaaattcaatgcaCAAAACGGGTAAAAACGGGACTTTGGCTCagtcctctgagggttaataCTGGTTCACCTTGCGTTTACTATATTTTCCCCCAGTGTAACCTGGCTTTCACTGTGTTTTCCTACCCTGGACTAagattatatgattattaacCATAGTAAACTTATATAAATGTAGCAGAGCACAGTCCGTGTCAAAGTTTTCTGTGGCAAACATTCAAATGATCTGTGTCTATTTCAGTACAACACAGTGAAAGCCCAGTAAAAGCACAGGAGTGCTGATATCAAGGTAACTTATGAAGAGGAAAACCACAGAAACAAGAGCAAGTGCAAGATGGCCATACAATTGTCATGATTTTCTCCAAGTGGTTAAACCTTTGAAATGTTGAGGCCAGACATCACTATTTGAATTCAAAGCCCCTTTCACACTAGCACACCAGACTGGGTTATGACCCACTTCTTAGCAACCCAGGTTATGATTTTCATTAGTGTGACAGCACGTACATGGGTAGAAAGTGGGCTGACCCGGGTCAAGAGCAACCCACCACAGGGTATAGGTCAGCCAGCCCGGGTAGAGTGAGACAAAAGGCATGATGGGTGTGAGTCAGCAGAGCATGTTACATGTGACCATACCTCCATGACTCTGTAAATCTAACCCACTACTTATAGCTTGAAAGCATGTTGGTTGACCTAATGTGAATGGGACTTTAGCTATGTCACAGTTAGGGCCCTGTGTTTGGCATGactaaaatacagtttaaaaaggcATGCAAAACACAGAGCCCTAGTCATAGTAAAGTGTGTCTTGGATTCCCCACAGGGCAGCACACAGTCGGCCAGGTGCTGCAAGGATGGGTGCTCTTGGAAGTCATGACAAGGGTTGCCATGTAACAGAAACCCCTGTGGATTAACACTGCCTGTGAGCTCTGTGGTGTTATCAGTTAGATCTGGATAAGTCCTCTCTGCAATGACATACCTTTAGGCATGTTCAACTTGTTAAATTTACCATAGGATGTTGGCACTTTTATCCTGGTTGTTCTGTGATTTCAACCATAGTTGTACAGTGGCTTCCTATGGGTTCAACATGTCTATACTGCACACTGGACCATGACTAAACCAAAGTGTACTATTGCCTATTTGCTTtaagaaatatgtatacatacattagaGTACATCACAGTATCCCCATAGATCATACATTCCCAAAGTTATAGCCAACGGTGATGGCGCTGCCATGGGTATGTGGCTTTGAAGTCATCCAGGCTTGGCTTTGCCTCTGAGGCTGAACATGGGCCTGTGAGCTTTCAGTCAGTGTTACCAGTGAGAGCTACATTAGTCCTCCCAACAAAAactataaacaacaaaacaaaacaacactatAGCTCTGTGTTTGCACTGTGGACtcaaagaaatgaaaagcagctGAATTGCTGGTACACTTTTGGAGGATGTGTGTCTGtctagatctctctctctcattagtACAAGGGTcatcttttcaaaatgaaaggggaaacaagataaataaataactggctaataataataacaataataaaaagtctAATATTTTACGCTGTTCTCTTTATGGTTTCTGGCACAGTATTCAGCAAACAATTGTTGGCTTAGACATGAATATCAAGTGCCAGAGGGCCATTCCATGAGATGGAAGGTGCATGACTAATAAAATTACTTTCACCTATGCACAAAGCACAGAGGATCTACAATATTCCTCCACCATGCATGTCAGCTTCCTCACAACTATGACTACACAATCATTGCACATAACCAAATTGTTATTAAAGGCACAGCAAATTTGCCTTCGATTTTGGGGTTGACATTTGCTTTGTGCATCAGGATACAGTTATGCAAAAGTCCTAGGCTGCATAAGACTTAGGAAGCTGGGTTATCAAAAAGGACAGAAACCAAAAAGAgtgccaaaacaaaaacacagtgacCTTTCAATGTCTAACACACAAATCTGTCATTTTCAGTCCAGCACACAAATTTTTGACATTCACAGCACAGCTTTCCTCCTGAAAACCCTGCTCAGTGGGATTGTGGAAATGggatacagatacacacaccaCAGTACTGCTTGAGAAGGATGGGTCCCCATCCCCAGAAGATCATGTTTTTCTCCTTGAGAATGATCCACCCACTTTCTATGTAATAAGACGACCATGTTGAGAAACGAATTATGGCTTTCAAGTTTGCTTCTGTTATGTACTTTAATCCCTGAGAAGCCACTGGAACAAATAACCTCCATCCAGATCTTCTCTCTCGCTCctcccccccttcctctctTCTGTATTGTTCATATTATCCAGTCTGGTTGATGCAGGGTGACAACATCAGATGCTACGAATCAGCCAGAAAAGTGTAGGGAAGAGTTTGGTTGGTTTGGCTTGAAGCAGGCGATAggatcaatatttaaaaacaaaacacaaaacgtataaataaaattaaaaaaaacagataggCTGATACCAGAATCCAAAACCTTTCTGTGGATTGTCAGCTCTATGGtcgcttttgtttgtttgttttgttctgtacaCGATTCTTGTCATGAAGCACAGGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99032 lncRNA upstream 17800 22357969 ~ 22361963 (+) True G79420
TU99027 lncRNA upstream 129931 22249631 ~ 22249832 (+) True G79415
TU99026 lncRNA upstream 144499 22235015 ~ 22235264 (+) True G79414
TU99005 lncRNA upstream 308270 22069423 ~ 22071493 (+) True G79394
TU98989 lncRNA upstream 333969 22044633 ~ 22045794 (+) True G79380
TU99066 lncRNA downstream 91305 22475437 ~ 22475983 (+) True G79443
TU99124 lncRNA downstream 315610 22699742 ~ 22703043 (+) False G79475
TU99127 lncRNA downstream 320657 22704789 ~ 22705108 (+) True G79476
TU99165 lncRNA downstream 703965 23088097 ~ 23088362 (+) True G79508
TU99166 lncRNA downstream 712459 23096591 ~ 23096838 (+) True G79509
AMCG00010272 mRNA upstream 282833 22079288 ~ 22096930 (+) True AMCG00010272
AMCG00010266 mRNA upstream 358805 22017684 ~ 22020958 (+) True AMCG00010266
AMCG00010261 mRNA upstream 493625 21880507 ~ 21886138 (+) True AMCG00010261
AMCG00010258 mRNA upstream 538860 21831125 ~ 21840903 (+) True AMCG00010258
AMCG00010260 mRNA upstream 553424 21791529 ~ 21826339 (+) True AMCG00010260
AMCG00010278 mRNA downstream 145998 22530130 ~ 22541832 (+) True AMCG00010278
AMCG00010279 mRNA downstream 266897 22651029 ~ 22694955 (+) True AMCG00010279
AMCG00010281 mRNA downstream 511788 22895920 ~ 22917724 (+) True AMCG00010281
AMCG00010283 mRNA downstream 621112 23005244 ~ 23044243 (+) True AMCG00010283
AMCG00010282 mRNA downstream 673488 23057620 ~ 23076233 (+) True AMCG00010282
TU99036 other upstream 954 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 954 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 332221 22046118 ~ 22047542 (+) True G79382
TU98308 other upstream 3240116 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 3292009 19087329 ~ 19087754 (+) True G78794
TU99122 other downstream 315610 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 315677 22699809 ~ 22703409 (+) False G79475
TU99599 other downstream 2448977 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 3608426 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 3628352 26012484 ~ 26026303 (+) True G80014

Expression Profile