RNA id: TU99122


Basic Information

Item Value
RNA id TU99122
length 3633
RNA type TUCP
GC content 0.40
exon number 1
gene id G79475
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22699742 ~ 22703409 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaatgaattcaTATTTAAGTGGCAtttccagaaataaataaaaaaagaacatactatGACAAAAACGAAGGAGAGTCCAAAATCGTATCGTTATAAATGACATTTCTCGTGGGAAGTCGGACAATATTTCACTAAACACAagtataaattattacatttttccatcattattttttttacagttgtacagcttttttattatcattaagcCTAAAACACTTAAATGGGTGTAAAAAAAGTGGTCAGCTATCTTCTCTTCGTATCTATAGAATCAACAAAAGACTGTGCAAATCAAACATAAATTGTACTACAGTATTGCATCACTTAAAAAGTGCTCTACAAAAGGTGCCCACATTCTTGACAATTCACCTTCTCCATGGTTCAGAAACAATGGTCAGGAGCTTTAAACTGGTTCTAGAGGCTAACAAAAACCCAATAAAACAGTTGCCAAAAACTCAGGTTTTATATATGACCCCCAGTGTCCCTAACCCATCATTCACTGAAGATGAGTGGTagtacattttgattaatatgcAGGTTCTTTACTTTTACTATACTGAGTcttttgtttactgtatgtattatatacacatatacacacacacacacacacacacacacacagtacttatagaaagtctacactccCTTTCAAAGTGTTAACTTTTTGTTGCCTTTTAGCcttgaattaaaatacagtaaaatctTCAAATCAAAGACTCAACTtcgggacaaagttgttgaaaggcacagatcaggggatgggtttaaaaaaatacaaaaaaagccctgaatatcccttggagcacagtcaggACGATTATTATTTGGTGGAAGGtgtgtggcaccaccaagaccatacctagatcaggccgtccctccaaactggatgactgagcaagaaggagactgatcagagaagTTATCAAGAGGCCAAGGGCAACTttacaagagctacaggcttttacggccaagactggtcaaagtgtgaatgtgacatttaaatggATCAAACGCTGAgtcactgacaacaaaatgtgaaagttcAAGGTGGtgcagactttctataggcactaatattataaaaataccCTCATGTGGAATAGACTTATTCTCCTGCTCTCTGTCATTTTAATACCTTTTAAAGCAGATTTGATTCTCCAGAGAGGTTCGCTTATTTGTCCGTTACATCACAAGCTTCCAACTTGAAAAACTGTGATAGTCTAGTGCAAAAAGAAACCCTGCATGAGCTTTCCAGAAAGAGGGCATGTCTGCAAGACTCTTTATTTCCCAATTCTCTCCGGAGCACTAAGTAAGCCCGTTGTTCAGTGTAGTCATATTAACCAACAAATATACTTGTCATTTTGTAGGTCATATTTCAAGGAATTTCTAGAAACTGTCATTCCAATGAAGCATTCTGTAAGTGTCAGAAACTGGAGTGGAGAACATTAGATCAACATTTCAGTAACATCTCTGCTTGCTCTTTGTCTGAAAACCCAAGCTAAAGCATGTAACTCCATGTttagaagaattaaaaaaagcacttttCAGCTTTTAAGGCAAACACTCAAATGAACAGCTGTATGACCCAGCTGCCTACCATGTAAATAACTGGTGAGGTGAAAATTAGTCTACTCGATCTGTGGTTCTAATTCCTAATTTGGAATTGCACTGTTGGCTGTGGAGTCCTCAATGCTTTACACCAAACAATCCACCTCAGACTTGGACCATAGCTTCCACCCTAAGGAGAGAAGCTTTTTCTAATTGTTGTCTGGTAGCATTAGTCATAGGGAAAGGAACCATCATTTTCCCCCCCGAAGCTcctatacacattttaaacacagcttTCAGCACCAGCACTCTAATCACTCTTCAACCAGAAGTAAAAAGCTCTTGACCAGTATTATCAAAAACCTTAATAAggcttaaaagaaaaacaaattgattcTCCTTAATTCACATATGAGGTATGAAAACaagtttgaagaaaacaaaatgccaaaaacattaatacaagtCTAGTGTTTTTGTGATGAcaggaaactgaaaaaataaagacaacctCAGTCAATGTTATTGCTTTGTCttgagagaagaaaataaaaatggaagctACAGCAAAGTAGAAAAACAGCTTTACAGCAGGTCACAAAAGTCTGTATTGCGGTTTAGAAGATTTAAAATGCTACTTTGTGTCAGGGCTGCTTGCTTGGATCAGTTCCCTGTTATTGTAGGCCATCAGTCACAACCCACTCAAATAGAAAAAATGACCGTGAACTCCAGACACTTGCACGTACCTTCTCCACGAACAAGGCACCGACAAAAACAGGCCAGTTTGATGAAGCATTGCAGTAGGTCTGAGTTCTGTCATGAAAATCACTAACCTGcacagattatttttctgtccTTCGCTCAGCCATGCTCTTGTTAAGATACAAACTTTTTTACAGCATTTGGCACCTTGTGGTAGTATCACTTCATACACCGTCTTCTAACTCCTCTTATGTAAAGTGCCAATTccgttattattttttaaatagaaagaaactgatgtaaatgtataaataacataCGTAAGGGTTCATTTAGAGTCTAGAAAACATACTGAATATGTGCTTTTGTGCTTGAGAATTATTCCTTCTTCATTTATAGCTATTCAACTGTCAATATCATTAAGAACAGGATGGAAAATCAAGCCTATGAGCATACTGATATAATGGTctttggtatttaaaaaaagctatgtaggaaataaacaagcaaatcaaTAAAGATGTCACAATTGTACAGACTTGGCAGAAAAAGTGATGTTGACTTGACACATTGTGGATGTTTCAGCTtactaataaaaatgcattggacaataACATACATGTCTGTCCCTTTAGTTTGGGGCAGGGGAGCAATGACATTTTCTTCCTATGATGTTGAAAAAGAGTTTAGCCTACAATAACGTTCCAACCTTCGCACACCGTAAAAACATACAAGTCCAGAAAAGGAGTTTTAAGACCAAGTCAAAAACTCAATGTCACtgagcaataatattaataaataactttgaaaaatactcaaaaactgtattttttcttctcaagcTGACTGTTCTCCAGTTCTATTAAGTTTACTTAGAATCTGTGCCCCCAAGAAAACGATACTTCACCGCCGACTCAACGCAGTCACCGTTCTCTCGCACCTCGAACGTCCCGCAGTCCCCAAAAAAAGGCCTAATGTTCGGTATCTTTGGCGGTTTTCCGGTCACGTCTTCCCCGGCCATCAGCAGCTCGGGGAGGTTGTGATGGGGCTCTGCAGGTACGTGAGGCTGTTTGCCTGGGAGTGCACCGCCACGGACACAGGGAAGCTGAAGACAAACGGAGACGTAGGGGTTGAAGGTTTGCCCCTGACTGCGGACGGACTGGCCGCTTCTACCGCACACGAGGTTGCGAGGACCTGCGTCTCGAACTGCAGCAGCTGTCCCATGAAGCTGAAGTTGGGCGAGATGATGCTCCGCCGTTGCTTCACGAACTCAAAGGCCTCCTCCAGCCTGACGCGCTTCTTCTTCATGAGATACGCCAGGCAGATGGTTGCCGAACGCGAGATCCCTGCTTGGCAGTGGACGAGGACCCGTCCGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99066 lncRNA upstream 223759 22475437 ~ 22475983 (+) True G79443
TU99046 lncRNA upstream 315610 22379763 ~ 22384132 (+) True G79427
TU99032 lncRNA upstream 337779 22357969 ~ 22361963 (+) True G79420
TU99027 lncRNA upstream 449910 22249631 ~ 22249832 (+) True G79415
TU99026 lncRNA upstream 464478 22235015 ~ 22235264 (+) True G79414
TU99127 lncRNA downstream 1415 22704789 ~ 22705108 (+) True G79476
TU99165 lncRNA downstream 384723 23088097 ~ 23088362 (+) True G79508
TU99166 lncRNA downstream 393217 23096591 ~ 23096838 (+) True G79509
TU99230 lncRNA downstream 482680 23186054 ~ 23188182 (+) True G79567
TU99239 lncRNA downstream 516163 23219537 ~ 23220917 (+) True G79572
AMCG00010279 mRNA upstream 4787 22651029 ~ 22694955 (+) True AMCG00010279
AMCG00010278 mRNA upstream 157910 22530130 ~ 22541832 (+) True AMCG00010278
AMCG00010272 mRNA upstream 602812 22079288 ~ 22096930 (+) True AMCG00010272
AMCG00010266 mRNA upstream 678784 22017684 ~ 22020958 (+) True AMCG00010266
AMCG00010261 mRNA upstream 813604 21880507 ~ 21886138 (+) True AMCG00010261
AMCG00010281 mRNA downstream 192546 22895920 ~ 22917724 (+) True AMCG00010281
AMCG00010283 mRNA downstream 301870 23005244 ~ 23044243 (+) True AMCG00010283
AMCG00010282 mRNA downstream 354246 23057620 ~ 23076233 (+) True AMCG00010282
AMCG00010290 mRNA downstream 406737 23110111 ~ 23138342 (+) True AMCG00010290
AMCG00010291 mRNA downstream 437108 23140482 ~ 23157907 (+) True AMCG00010291
TU99036 other upstream 320933 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 320933 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 652200 22046118 ~ 22047542 (+) True G79382
TU98308 other upstream 3560095 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 3611988 19087329 ~ 19087754 (+) True G78794
TU99599 other downstream 2129735 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 3289184 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 3309110 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 3677093 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 4853041 27556415 ~ 27557007 (+) True G80249

Expression Profile