RNA id: TU99269


Basic Information

Item Value
RNA id TU99269
length 235
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G79597
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23337972 ~ 23338206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccctcttctgaccctctcatcccctctcgtatctcttcctgcttgtctgctatctccacctggatgcactcgcaccacctcaagctcaacctctccaaatcggatctccttttttccccccactcttcctcaccttctgctgacctctccatctcaatccccttggaatccaccacactctctccttcttcttctgctaaaaatctaggagtcaccctcgatcctgcgctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99268 lncRNA upstream 4499 23333264 ~ 23333473 (+) True G79596
TU99260 lncRNA upstream 11365 23316015 ~ 23326607 (+) False AMCG00010292
TU99239 lncRNA upstream 117055 23219537 ~ 23220917 (+) True G79572
TU99230 lncRNA upstream 149790 23186054 ~ 23188182 (+) True G79567
TU99166 lncRNA upstream 241134 23096591 ~ 23096838 (+) True G79509
TU99341 lncRNA downstream 192428 23530634 ~ 23533701 (+) True G79658
TU99344 lncRNA downstream 290419 23628625 ~ 23630604 (+) True G79660
TU99359 lncRNA downstream 300847 23639053 ~ 23650720 (+) True G79673
TU99360 lncRNA downstream 300847 23639053 ~ 23675957 (+) False G79673
TU99358 lncRNA downstream 306331 23644537 ~ 23650720 (+) False G79673
AMCG00010292 mRNA upstream 8426 23316082 ~ 23329546 (+) True AMCG00010292
AMCG00010293 mRNA upstream 24512 23309509 ~ 23313460 (+) True AMCG00010293
AMCG00010291 mRNA upstream 180065 23140482 ~ 23157907 (+) True AMCG00010291
AMCG00010290 mRNA upstream 199630 23110111 ~ 23138342 (+) True AMCG00010290
AMCG00010282 mRNA upstream 261739 23057620 ~ 23076233 (+) True AMCG00010282
AMCG00010297 mRNA downstream 107911 23446117 ~ 23450175 (+) True AMCG00010297
AMCG00010298 mRNA downstream 112986 23451192 ~ 23466316 (+) True AMCG00010298
AMCG00010300 mRNA downstream 138192 23476398 ~ 23478378 (+) True AMCG00010300
AMCG00010299 mRNA downstream 142677 23480883 ~ 23511626 (+) True AMCG00010299
AMCG00010301 mRNA downstream 259111 23597317 ~ 23627422 (+) True AMCG00010301
TU99126 other upstream 634563 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 634598 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 959163 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 959163 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 1290430 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 1494903 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 2654352 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 2674278 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 3042261 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 4218209 27556415 ~ 27557007 (+) True G80249

Expression Profile