RNA id: TU99359


Basic Information

Item Value
RNA id TU99359
length 4896
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G79673
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23639053 ~ 23675957 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccatatacaaatattaaaatccatGTTCAGGTGAGCCTGTCCTAAtgggtggggggagaaaaaattataaaccgTTCTGAATACAACCTGTGAGAAAAAGGATAATTTTTGATTAAGGTTATACGCATGAAATTCTGAGAGAAGCGGGCTGCTTGCAGAAGAGTAATATCTATggagaagggaaagaaaaaagaaaaaaaaaaaaatgcccagAAGAAAagaactgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatatggtgttttctttgttattttcagtCTTTTGGCATAAATCCTCAATGTATACTATGaccataaacaaaaataaatctagtgTTTCTTCGAAAACCAAAGAATGATCTTACAACCCCCctcgccccccccccacacacacacacacacacaaataaaatctaaatatgtattttaacatttcaggttACATATATGTTAACAGGATTATAAAACATCTTAGTATTCTTGCAATAATAAAACTgcttattacattattaaccCTGTATTGCTTTTGTCCTGCATTTAACTAATACTGCACTACAACTGTGCTGTTATGTAACAGTTAGTAAACTTCATGCCTTTGAAGCAATTAAAGACATTATTCTCTTTATTAGGCAATATAGAATTAATTTGTATATCTGTTTTGAGATAAATTTCCCTCTGCGAGAAAGTCtgaactgggaaaaaaaaaaaaaaaagtcaagattACACGTTAACAGCATTAAAGTGGTTGTGCAATGGTGGGATACAAAGTAAAACTAGCAGAAACAGATGTATATCTAAGTTATCTTTGGTTAAGCACAGGTAGTGAATGGTTtaaaggttttatatatattatatatataaaaaaaaaacaagtaaggCCAATAGAAAAGCAATGGCTcaggtattcatttttattttgcaattcaaatcaGTTCTCATAGGCAGCCTCAGTGATTTTATAAATTCAAGTCCAGGAGGATATAGTTCTCAGATATCAACATAGGCTGACATACTTAGTTGATAAGCTTCCAAAgactaaatatttttgttttgctaaaatCACAAAAGTGAGGACCTAtggaccaaataaaaacacagttatGCGACTCACAATTACAAACACCCATTCACTGATCTGCACTGGCTTTTGTAGCCAAACCATTCTTAGATAACTCCTTCCAAAATTCATCAGCTGAGGGAAAGCATATCAATTCATAGAccacaacacattttgttttccagtcatAAAACTCAACATCACACaacacatgtaaatatatacaacacaagaaaaaaaacactggataCAGGTGTCAGTTGTTAAAATCCTACAAAATATTCACTGAGAGAATTATATAAATCGAGATGActttatacaatatttgttttgctaaaatgtatatatagattcACTTGAGGtgcataacttttttttgtgctAGACTGTttagcaaaaatgtattatgaaaatGAGAAATACATATTCTATAGAGATGTCATCCTAACCAGAAGGATAAAATCATAGCTGttgttcaaaataaaagttgattttatatatatatatatatatatataaaaaggcaaCAAAGCACCAAGTGGTTGCCATAGAAATCTCTAGATCACAAGGCAATGGCTTTTCTTATGCAGCATTGGTTGTCTAGACTATTCAAAAACCCTAAACCAAGAAACTGCAAAgtgcacaagaaaacaaacgTCCAAGGGAACCACATCCTTAAAACCATCTCGAAGGATGGGCAGCTGAAAACGCCCAAGCCGCTATACAATTATACACCAAAccaaactgaaactgaaatgtatgaCTTTATACAATGATTCTTAGTCACTAggcaattacaaaacaaaacgagagatgcagaaaataaatacaattccaaaataatttctaaaagtgcagtaattacattttcaagttaaCAGTTTTTGGCCTTCATTCAGTTCCATGAGAAATAGGCTTGAAATGAAGGACGCTAGACATCCAGTGAAATTAAACTGctacaaaacaaatgcttttcaatTTGGCAGATACTTGTTTTGTCGGTTATGCTGTCTGCTTGACATTATACTGAAACTGAAGGAAACCCATGTTTAAgacctgtttttaatgttagtttttgtttagaATCAAATCGGTCTTTCTTTCACCACCTTTCAATAGTAAATGTCTTTGTGcactttatttgctttttcacaGTATAGGCCATTATAGACAACTCCGAAGCAAGAGACAACTGATGTGTCAATGATATTGTGCAAAAGCATTTATGTTGAAATGTTATAGTGCATACTTTTGCAGTAGTAATACtaactgtacatttataaagtCCTACTACACAGACATCTCAGACTTAGTGTTGCCTACCAGAGGAACTTTACTGTAAAAGTCGAGTTTGGGCATGCACAAGCAACCCAATGTAATCATTAGGGAATCCTGCTGCTGCCAAGATAGGATATGAAGGGAATAAAAATACTTCTGTAGCTCATCTTTAAGAGTAAAATGTATGGCAGCCAAGTTAGTTGTTTTTCTATGGTTTTATCTTCGGGACTGCAGATAAAATGCTATATACAGTAACAGACAGACTGTAGATACACAACCTCCAACATACAAGATTCAGGGATATAGTTACAAAGCATTCCACActgggaaaatattttaatcaagttTGTATTCAGCAAAAACCTTTTCTACTTCTAAAACCTCCAATGTATAATGTTTATAGTATTTGCCAAAAATGAGATGCAccttgtttacttattttacaaaatagttTCATTATGATCaatgctttataaatatatccCTCAATGCTTAAGGCTATAAAATGCATTCCAGCACtagaaagtggaaaaaaaaacagaagaattaCAAGAAAAGGCATGAATAAAGCACTTGACTGGATTCATTGAAATTAGTCAATGCAGGCATGTCAGATCAGCTGGAActtggaaaatattaaaatacaagccCTTTCACATTCCCACCAGAATCCAAAATGACAGGAGAATGGCCTGCATGTGCTCATGTCCAGTTATTGTTTACGTATTGGTTGATTTCTACTGGAGTTGTAGGTTTGGTGGACACTGCTTGTTATGATGTGGCAGAACTGGGTTTTGGAAGATGCGGATCAACACTACGTTGCATTGCTGTCAACTGTATCGCAATATCATGCTTGGCAAAATTGTTTTGATACTGTTATTCATATGGGAATGGTGACAgaatttattcagttttacagTTGTGGAGTGTCAGTAGAAGGTACACCACACCAAGAGACATCCTCCTACAAATGGAATGTTTATCGTCCTCTTTACAGGACATTTGTAACATGagtttagactttttttttttttttcctgagtaAAATGAATACTTTTATACGAGATGATGCCATCAGCAAAAGAAAGCTAAAACTGCCAATTAAAAAGTGCCTTAGAACTCAGCCAGTGGAGGTTTGACTGGCCTCCTGGTTATGTTCACAAGGAAGAGTGCTACCCTGCCTTTTGTGTTAATGAGCCAAATGAAACTGCTTGCATTGACAGTGCTCTTTCGGACATGCTACCaactgaaatagttttttttttttttttttctgttctcacTAAACTATCAGCATTCCAGTAAGAGGATGTTTTAACACTCCCCATTTCCCAAGTCCCAATTCAGTTAGGTCACCATCCACGAGCTTTATTATGACCCAGTGCAAtcttaattcaaatattaaaacaatcagaATGAGGTCAGAAATGTCTATCtggaatatatacagtacagggGACCGCAATGGTGAGTAGTATCAAAAAGCCACATGTTAAGAAGGTCTTGTTCATGAAAGTACACTTCTACAAATGGAGATGGCctagttttatattttggataatATATAGTATTGGATAAATCTGCTCAATTCATTTTGATGCACTTGTGttgaaaaacactttaaaagtaTACAACTTGTGGAGTATGCGTTTTGAGATTTATTCATCCCCAGAAGTATACACATGCCCAGCAATATTGCAAGCTGtagattcccccccccccccccatgtacTTTGATCCATATGTTAACTTTCACTCCATTAGGTATCATAGTTCCAAGGTATATGATATGCATACATACGATTCAGTAAACCTTCAAATACCCTGTCCATAGTCCCTGAGCAATCCAGTATATCTTCCTTTACAAATCCAATACCGAACTCAGACCAACAACTGTAGAAGGAAATGTGAAGTCCCGTTTGAGTTGCACATGCACCGAGCCCCAAACTGAAAGTGAAGTATGGTCAAGAATATCATAGAAACAAGCAACACCTTGATTTTTAGCATTTATTAGGGCTATGTCCCACCACCATAACCACTAACATCAACCCACCCTAATCCCCCAGCTGCACCCTAATCAAAGCATTTCTCAGTGTCAATGGGGGACATGGAGATGTATGGACCATTTTTTAACTGCTGGTTGGTGCTCGAGTGGTTTTCAAGGGTTTCTTCTGGTTTGTCACTGACTTGAGTGTAAGCAGTGTCTTCCTTTGCGGTCGTCTACAAATAcgtaaaaaaagacaaaacgtGAATACATTTATGTTGTATACAGTGCATGgcatacagtataataaaactgcaattaaaatctACTTAAATCTGAAAATTATCTAAAATTTAACAGCTGCCAAAAGTACTATGCTACCTCAGTGAATGATCAAAACCCTGGCTTGCCTAAATTGGCGCTTTCAATCCCAATTGTGTTTGTATAAGCAAGTTACAACAGGGAGTAGATTAATTGAAAGTATAACTAAAATGTGACCACTAGTGAAAATTACAAAATCACTATTCATGTTACACTCCAGCTACAGCAAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99344 lncRNA upstream 8449 23628625 ~ 23630604 (+) True G79660
TU99341 lncRNA upstream 105352 23530634 ~ 23533701 (+) True G79658
TU99269 lncRNA upstream 300847 23337972 ~ 23338206 (+) True G79597
TU99268 lncRNA upstream 305580 23333264 ~ 23333473 (+) True G79596
TU99260 lncRNA upstream 312446 23316015 ~ 23326607 (+) False AMCG00010292
TU99366 lncRNA downstream 38010 23688730 ~ 23698248 (+) True G79675
TU99462 lncRNA downstream 191739 23842459 ~ 23844584 (+) True G79749
TU99463 lncRNA downstream 191739 23842459 ~ 23884807 (+) False G79749
TU99467 lncRNA downstream 200306 23851026 ~ 23853436 (+) True G79752
TU99501 lncRNA downstream 270040 23920760 ~ 23926756 (+) False AMCG00010320
AMCG00010301 mRNA upstream 11631 23597317 ~ 23627422 (+) True AMCG00010301
AMCG00010299 mRNA upstream 127427 23480883 ~ 23511626 (+) True AMCG00010299
AMCG00010300 mRNA upstream 160675 23476398 ~ 23478378 (+) True AMCG00010300
AMCG00010298 mRNA upstream 172737 23451192 ~ 23466316 (+) True AMCG00010298
AMCG00010297 mRNA upstream 188878 23446117 ~ 23450175 (+) True AMCG00010297
AMCG00010310 mRNA downstream 73671 23724391 ~ 23731715 (+) True AMCG00010310
AMCG00010315 mRNA downstream 123801 23774521 ~ 23786354 (+) True AMCG00010315
AMCG00010313 mRNA downstream 161830 23812550 ~ 23836468 (+) True AMCG00010313
AMCG00010314 mRNA downstream 206960 23857680 ~ 23860700 (+) True AMCG00010314
AMCG00010319 mRNA downstream 247053 23897773 ~ 23917606 (+) True AMCG00010319
TU99126 other upstream 935644 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 935679 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1260244 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1260244 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 1591511 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 1182389 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 2341838 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 2361764 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2729747 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3905695 27556415 ~ 27557007 (+) True G80249

Expression Profile