RNA id: TU99366


Basic Information

Item Value
RNA id TU99366
length 4439
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G79675
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23688730 ~ 23698248 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGATGCTCCTACACAAGGTGCGAGCTGCGCCACTGAAGGAGGGAGTTTTGGAAAGCGCAATGGAAGTGGTGCACAGAGCGAAGAGGTCGCTGTTCTGGCGCTGGAATATGTTGAGACCAGTGGGCTACAGCTGCAGAGAACACTTTGAGTGTGCCACCAATTACTGCAAGGAAAGATCTTGCACTTTCTTGAACTTTACAGCGTAGAACCAATCAAACACCACCTACACAGAGACTGTCCTCTCCCTCCAAGAAACAACGATGTGTGAACTGATAATTCTTTGGCAGCTTGGTAGCCTCTTTAATCAAAAAAGCCCTCTGTTATAATTAGTTATTGGTTAAGCaatcctgtaaaaaataaatctataaaaagACACCCTTGCAAATATGATGTTAATATGTAGTAAAGACCTTACGTTAATAAAAATAACGTTACTATAAGTAATCATACCAGATCTATATAGCGGAGACCTTTAGCATCCAACACATTTGAGAACATATTGCCAGTGTTCAGTGATTATGGGACGAAGTTAGGACACTAAATGAATCTCCAGTCTTTACATTATGCTtcaataaaccaaaatattctgattatatattaatgttttattaatggctAACAATGGGAAGTTTGTTACAGATGCAAAGCAATAGACAAGTGTATGTGCCATCTCTCAATCCAGATTTGAAAACTAAAGTTTGGTTTAtatggggggagaaaaaagtgTTTGGACAAAGCATGTCCATATTAGAAATGCAGAAGATTAATATAcatctttattctttattaagCCTTATTATaaccattaaaaacattgtgttaatttaatttaaaatggaaaaagttggtttagattaaaattaatacttCAACTTTGCAGGGCTGAGTATATGGGTCTATTGTTGTATAAACACTGTACAGAAAGATAGTTTGCACACAGCAATATTGAAGGATTATAGATGTGTATATTgccttatatatttattttttgaatgcattatttCTTGTTGCTGGAGTTTGAATGCACATAAAGAATGTAAACCGTTAAAATGGTAAAAGgtaattttattgttattgtttgttacagtaaaaagtgcatttatttttttaatgttaaacatgCTAAACTATTTAGCACAAGgtggaaaagagagaaagaaattcTGTACTGaagtgaaagaaataaaatcagttttgaGGAATATGACTCTGTGACATTTACAGTGAAACCTGGTGGTTTCGGACAAACACACTGGTGCACCGGAGAAAGATGGAGGACCCACAGACATTCAATACAGTTCAATTTGCACATATTATTTATAGCATTGTCAGGTATCTTACacagttcattaaaaacaatcaaacatacAGTCAATGATGCCAAGCCATATACACAAGGAGTGAGCGACAGGATTTATTGATTAGGTTATACATAAGGAGGGAGCCATTCCATTCCAAAGTTCtgacacacaaatgcataaacCTTGCTATGCCATTACCTTCAACCCGTACTGCATGGCATTGAAAAAGGCTTTTTCTTTAgataagaaaatggaaaacttCCCTGTATCTTTTTGTCAAAGTCTAACTATCTCTCCACAGGACAGACGTCACAGAGGGAAAAATGGGATAAAACACTGGTGCCAACATAGGCTGTTTAGCGTTTTCTTTGCCCTTTTGCagacttcatttatttaacgGACGCCTACAAAAATTGGACAAGAGAAATGCAAAGTCCTCTCTCTATGGTATGTAGGACCtgtcacacaaaatacacaagagTAGTGGTTTATTCAGTGAGGTATGATCAGTTAAAGCCTTCCTGTTCTTAGATTCCACATCTTCAGGGCATGCTTTATCCTGAGAGAGGATAGTTTGGGACCTGAAGGGGATAGGATACTGTATGGCCAGGATATTGAGACTTTTTTCATGGATAGTTTACATCCACCCTGGTACTGGAGAGCCTGAATGCCTCaggttttataattaaatcattaaatcaccaccattaaatctgtttaaaaagtCCTTGAATTGCATTCCGCCCATTAGCAGGTGTTGTGGTAAACACCCTCAGAGATTAACACCTGCATACCCTTTAACAGTGAAGGTCCAGAGATCACTAAATCAAACAGATGACTTACTTCACttagtaattacattttcccagCCTCCCAGGAAACAAACTGGTGCTGGCGCTCTCTTCGGACACAGGGTGGGGGGCAGCCCCATGTACATCTCATAGCTTCCACTCAGAAACCACAGGGACAGTTTCACTTAACTTTGAGATTTCAATATTAGGATGAGCATACATATTCTCAGGATTGCTCATTCCCGAAGAGATGTACTTAATCGACTTGGGTATAAAATGCATCTGCAACTACTTTTACTGCAACTACTTTGTGTTCTCCCCTACTCATCGACATCTTCTCACCTCTCATCTACAAATCCAATTCAGTCAAACATCTCTTGCTGATGACCTTCTGCACCTTTTGAAAGTTCTGAAATGAGTCAAGAGGACTGTGAACAGCTGCTGAGTTAGGGTCAGACCAAATCATAACTTCGACCAAATCGCCAATCGCAAAGTACTCACCTGTGGCAAactgtagtttaatttattgtcacatGCCAcgttctactacttataaatcaaaacttgatcggttaaaagttaaaacttgatgctttaatttggtctaggccttaaTGTGATTGCAATTTGTAGAACCGTAAATAAAATGCTTCAATGTAAGGAATAGGGGTGAACACATTCTGTATCATATTTGAAGCtctgtaaatgcatttgaactTGAAGTAAAGTAATGACTGTTTGGTGAAATcgtttgtaaaatatatatacattgttcaATGGGTCAGTGGGCTATGAACCCCCGGACCCTGAAAATACCATCGACGTCAGCAGCATTGTCCATCCTAATACATTACTATTAAAGTGCAAATccttaaatactttaaaaggtATTCCATAAAATACTAGCACAATAATACACTATGGCCGACAAAGTGATTGGATCACCTGGAAATCACTAGGAAAGGAAGAATCAGAAGAAATTAATCATTAGTTATTTTGTCTCCTTCTTtggaatcatttttatttacccCACAATCGCATTCAGGGATGTCAGAGGTCAAATGGCTATGAAAGATACACAATGTTAGATTTTCTTTGCAGGGTTCTGTGTAGAAGCTTTCCTTTCCCAGTCGAATTGCAGTAAGATTTCCAAGTGATCCCATCATTGGAAACACCAGCTATCATCATTAATTAGGATAAGCACCAAAtggataaatacaaaaaacgtAACGTCCGACAATCCAAGAAATGTACATATCTGTTATAGATAGTGTTGACCTCTCCTGATAAATACAAACACTGGTTTtcctccatatatatatatatatatagacacacacacataaatattgtatattttgttaccAACTTTCCATCTGCtttgaaaaaaagtgaaatgtcaCCAATACCCTCGCTCATCACTTCCTGCTGCCATTGTTCATTGGCTGGAGTTAGGATGTCACTGCAGAGCTCCAGTGAGGAACCTGGGCATCCCCGGGTGAGTGGGGGTCAGACTGGGGTCAAAGAGCATCTGCTCAGCTTCAGTCTACTCTGGAGTGAACTATAACGTGAGCAAAAGCCGTagtattgtataaataaatgagacgtgtgtgtgtgtgggaaatGTACTGACAGAAAAGGATCAGGATCATGGTATAGAAATTGCACTTCAGTGTGCTGTAATGCGAGAACTTATATCTGCTCAGGCATCTCATGGTCACCATTTAATCAGCCTCTCTCCTCTCCTACCGACGGAGGGCCATGTGGGGGAGAGGTTAACCCCAGAGCTCAGGGAAGCTGAGTGAGGAATGTGGCAGTATTCCCCCATGACTAGCAGGCACTTCTCACATTAACTCAAAACCTCAGGGCCCTGCTAATGATCCACAGCCTTTTAAAACCCACACCTTCCCACAACCAGGGCAACACAAAAAGGCTTTCGGCTGAAAGTGGATGCTCTAATATTACGGCAGAGTTTTTAACTTATATTTCAGGGGAAGGGAGGAGTGAGAGTTTTACTGGGGTCTTATCTTCAAATGGAGTGAATGCATACCAGGCCAACTTTAGCCCTCAACAACACTGGCAGCAGCTGTTCGCACAGGAATTCCCTTCACACTCGTCAAGTATCAGATTAACACGCGATAAGTATTAGTTAGTGCTGGAAGATAATGTCAGCTTCTGTAGTTGCAGTTGCTATGCTGGagtaaggaaaaaaaatgccacTTCAACCTGAGGAGAATGCTACTCCCCAGGCTATGTTCCTGTTCAACTGCTTAAGACGGCTGCAGTAGGGGCTGTCGTTCACTTGCAGAAGCCTGAAAACGAGAGGAGAAAGATTGAAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99360 lncRNA upstream 12773 23639053 ~ 23675957 (+) False G79673
TU99359 lncRNA upstream 38010 23639053 ~ 23650720 (+) True G79673
TU99358 lncRNA upstream 38010 23644537 ~ 23650720 (+) False G79673
TU99344 lncRNA upstream 58126 23628625 ~ 23630604 (+) True G79660
TU99341 lncRNA upstream 155029 23530634 ~ 23533701 (+) True G79658
TU99462 lncRNA downstream 144211 23842459 ~ 23844584 (+) True G79749
TU99463 lncRNA downstream 144211 23842459 ~ 23884807 (+) False G79749
TU99467 lncRNA downstream 152778 23851026 ~ 23853436 (+) True G79752
TU99501 lncRNA downstream 222512 23920760 ~ 23926756 (+) False AMCG00010320
TU99545 lncRNA downstream 573027 24271275 ~ 24275684 (+) True G79820
AMCG00010301 mRNA upstream 61308 23597317 ~ 23627422 (+) True AMCG00010301
AMCG00010299 mRNA upstream 177104 23480883 ~ 23511626 (+) True AMCG00010299
AMCG00010300 mRNA upstream 210352 23476398 ~ 23478378 (+) True AMCG00010300
AMCG00010298 mRNA upstream 222414 23451192 ~ 23466316 (+) True AMCG00010298
AMCG00010297 mRNA upstream 238555 23446117 ~ 23450175 (+) True AMCG00010297
AMCG00010310 mRNA downstream 26143 23724391 ~ 23731715 (+) True AMCG00010310
AMCG00010315 mRNA downstream 76273 23774521 ~ 23786354 (+) True AMCG00010315
AMCG00010313 mRNA downstream 114302 23812550 ~ 23836468 (+) True AMCG00010313
AMCG00010314 mRNA downstream 159432 23857680 ~ 23860700 (+) True AMCG00010314
AMCG00010319 mRNA downstream 199525 23897773 ~ 23917606 (+) True AMCG00010319
TU99126 other upstream 985321 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 985356 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1309921 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1309921 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 1641188 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 1134861 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 2294310 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 2314236 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2682219 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3858167 27556415 ~ 27557007 (+) True G80249

Expression Profile