RNA id: TU99462


Basic Information

Item Value
RNA id TU99462
length 1730
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G79749
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23842459 ~ 23884807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatgacagaAGACACACAGGGGTGTATaggacattgtattttattggtaTTGGTACCAGGTCTTGAGCAGTACAGAGGCAGTTATCATCATCAGGCTTCTGAAAGAGCTCTTTGCAAAAACATTGAACTTGTGATTAATGAAGAGCAAAGGAAAGATTAAGAAATTCAGctgaaaactttttttccctgttAATTATTACATCATATTTTGCAAAAGGAGAATTCTAAAGACACATCAGTCATTTCTGCTCTGCGACTGCTCCGTCGAGATTCTTGAAATGTGCTCAATCAGCAAATGGTCTTGAATTGTAAATGGTCTTAATGCTTTGTTATTTGTGATAGGATTCTTCTGCAATTGTTTAAAGATCAAATATGAGAATtaaacataatgaatacatGTAAGGTTGTGTGACAGGTACTACTACAAGGGCAGAGTACaacacaaatattgatttcttctatgtgaccatctgaatgttTTTCTCACAAGTCTGAATCTTTTCTGGGGCAGTTTACAGAGGTGTCCATCTATGCTGCCTTTGaacatacaacatacaaataCCTTAGACCTCTAATTTTTAAGATTTATTCTGTAAATATGTTCTGGTTAGTGTGAAACAACACAATCACAACACTCAATGTGATGAAAAAGGCTTAAgcaaggattaaaaaaaaaaaaaaaaaaaaaaaaagatttaaagcaAGGAACCTTTTAGGAACATCCTTCAATAACTATTTTTAGGTGAGGTAACAAAACATTACCCTTAACACTAATCTGAGAACAGGTGAATCAACATTAAAGACAGAGGGAAaaagtaaattactttttttggaacttttctgttttttttttttttttacttttttgtttttgtatttgtgctcAACAAATGGCTATGAAtcagcagcattttttttctgttattaatttCTTTTGGCTCAATTCAGTATAGCCTGGTAAGATAATGCCCTAGATCACTGCGTGTTTCGGACCCTACAGCTCTGATGGAGAGAGATGTTTCTGCTACATAACACCGACAGGCTGCAGAGGGGGGCAGGGTGAGGTGTTGCCTTCCTGCCGCACCAAAGTGGCACTGCAGGCCAGACTGACAGCCTCCACGCCCACCCCCTCCTGAGCACTGTCCTCGTTGTAGAGGCGCTTGATCCCGTCGAAGAACTCGTCCACCTCCATCTCCTCCACCTTGCGCTTGGCCGAGGCTTGCTTTCCACGGCCCAGCCGAGTGAAGGACGCTCCTCTGATGGGGGCTCCCGGGCGACGCTTGTCCCGGATGGCCTGTTTCACTGCTGGGTTGATGACCTCTGGGACCGGGGAGAGGGGAGGGCGCAGCGTGGCCCCTTGGTCACAGGGGGTCAGGCTGCGCCGCAGGGGCTGGTAGATGTATACAGTGTTGGGAGGCATGGAAACCTGGTGTGGAGACAGGCAACGTGCCACCAGCTCTCGACAGCGTATCAGCTGGGAACTATCGATCTGCTCTCTTCAGCAGGTCGATAGTGAGAGCGAGCCAATCAGGACAGCGCTTTTCCAGTTCTAAAGTGATGACAGCCAGTGCCAGCATAGAGCCCTTAAACTGCAGCAGTGTGTGATCGGTCTGGCAGTGATGGAGCTGCCGGGTGAGCAGAGACACATGCTGAGACGGGCTCATTCCTGGCACGATGGCAGGGACCTGGGATCTGCTAGACAGCACCATCGCATGGAACTAGACAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99366 lncRNA upstream 144211 23688730 ~ 23698248 (+) True G79675
TU99360 lncRNA upstream 166502 23639053 ~ 23675957 (+) False G79673
TU99359 lncRNA upstream 191739 23639053 ~ 23650720 (+) True G79673
TU99358 lncRNA upstream 191739 23644537 ~ 23650720 (+) False G79673
TU99344 lncRNA upstream 211855 23628625 ~ 23630604 (+) True G79660
TU99467 lncRNA downstream 6442 23851026 ~ 23853436 (+) True G79752
TU99501 lncRNA downstream 76176 23920760 ~ 23926756 (+) False AMCG00010320
TU99545 lncRNA downstream 426691 24271275 ~ 24275684 (+) True G79820
TU99553 lncRNA downstream 450804 24295388 ~ 24298215 (+) True G79827
TU99555 lncRNA downstream 455715 24300299 ~ 24301869 (+) True G79829
AMCG00010313 mRNA upstream 5991 23812550 ~ 23836468 (+) True AMCG00010313
AMCG00010315 mRNA upstream 56105 23774521 ~ 23786354 (+) True AMCG00010315
AMCG00010310 mRNA upstream 110744 23724391 ~ 23731715 (+) True AMCG00010310
AMCG00010301 mRNA upstream 215037 23597317 ~ 23627422 (+) True AMCG00010301
AMCG00010299 mRNA upstream 330833 23480883 ~ 23511626 (+) True AMCG00010299
AMCG00010314 mRNA downstream 13096 23857680 ~ 23860700 (+) True AMCG00010314
AMCG00010319 mRNA downstream 53189 23897773 ~ 23917606 (+) True AMCG00010319
AMCG00010320 mRNA downstream 81988 23926572 ~ 24009853 (+) True AMCG00010320
AMCG00010321 mRNA downstream 236709 24081293 ~ 24123623 (+) True AMCG00010321
AMCG00010322 mRNA downstream 352892 24197476 ~ 24214335 (+) True AMCG00010322
TU99126 other upstream 1139050 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 1139085 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1463650 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1463650 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 1794917 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 988525 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 2147974 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 2167900 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2535883 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3711831 27556415 ~ 27557007 (+) True G80249

Expression Profile