RNA id: TU99545


Basic Information

Item Value
RNA id TU99545
length 1960
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G79820
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24271275 ~ 24275684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATTGATTTAGTGGCTTCATAATAAACCTTGCAAGTTGGCTGTTACTTTTTATAACTCGCACACCTTTTAAGCTCACAGGAGAGAATTGGTTTATTGATGACATTTTCCAGGAAACTCTTGTACTGGACAGAGGAAAGCAGCCTTTTCTTAGccacaggacacacacagaaGGGCAGTTACATCCGAGAAGAGAACTTTGATGTAAAGGGATTTGAGGGCTTTAGATGTATCCACTCACAGCACGTTTAACATTTAAGATTTTGTTCAGGAACCAAACTTTACAAACTTGGAGTGTGATGCTGTTAAATTATGTAGGAAGATCATAACCCCATAAAGTATTAtccaacaaatacaataaattaaacaaaatcttcTTCAAACAGCAGACATCaacttgttttttaacacaagaTATGCCATATGGGTTCTGTATCAAGAAATGTATACCTGTAGTTCATTCCTCCCCCACTAAATTAATACTAGCAGATGTTAATCTACACCAAAGCCAACATTTCAGCCAAACTGGTTTGAATACATTCCTCAAAGCagtaaaactatacaaaacagtAATGATATTAGctagtcattaaaaaaatatgtattatccAATATTGTATCCTTGACTTACTGGCAGTACAGTCAAAAATCGTTTTCAATCTGTACATCATTAGTCAAGTTTCCATCAAGCTTTCTTTTCCCGATAAGTCAAATAAGAAAACTTTACAACAGGCTTGATGGAAACAGCAAATGCCGAATGAATTGCCAAAAGTGGGCCAAAAGTTTTAAAGTTCGACGGAGGTGAATTTTTCATACGTCGATGTAGTCAGTTATGTGTCACATGCcagtattacatattttgtccaTCCAAGTCAGTTGGATGGAAACGCACCTTGGCTtggaaaatgcacatttactttttatgcaAACTTAAGAAGtttcacacaaaacatgttcGATTAGCGGATAGGAACTTAGCTATTtgataaaagtaataatactaAAAGGAATAGACTATATAAGCAGTCTTCTTTCGCTAGGAAATTTAgtctttgtgtatttgttgtacTGCATGTTGACTTTGGTAACAATCTCCGCAGAATCAAGAGCAGAATATTTCATACTTACCAACACatgcaccaaaaataaaaaaagatcatGCAGAAGCTGTACAGTTGCTGCTTTAACATACTACGATcttaaagctttttatttttgtatttgcaagTTCCTGCATTTACCTAGTTTGTAAGTGACCTCACTGATCATCACATGAAAGCACTTTGAGACTTGGCTTGTACAATATAACAATGCTCCCCAGTAGGATAACATCTTACTACATTACATGAAGCCATATAAAAGGCAATGAAAACCAGGAACATTAAAGGTTACCCATCAGCAGCCTGCAAGAACTGCAGAGTGGCTGTGTCTGCAGCGCACAGGCAGCTGTGCAGAGGAAAATAACAATCATCTCGCCGTTCATCGCCTGAATACAGCTGTAGGGAGCCCTTTTCTAACACGGGAGCTTggagctttttctttttgaggGGGAGCgtgcataatatatttataccaAATGTCAGCACAAATGACAAGGCAAACAAATTCTCACTCCAGTCCCCCAggacaaagaaattaaaaacttcTGGAGGCACTGGCACGCTGACTTCGGAAATCAAACATTTAAGATCTGCTGCTGGCTGTATAATGCGTACCTTAAAGAAGAGAGGGTTTCCATTCAGGGACTCTGCTCTCTTGATGTTTTCCACACCGCACtgcaacagagagagacatgCCTCCTCTCCTAGCACCTGGGAGTATTCGATATCCAGCTCATGCAGGGTCTCAATGTGGTCGCTGGTGAAGGCAATGGGGACCAACAAGATGTTCTTTTTCCCCCTGTGACACAGTCCTTTAATGGTCTCGTCTGTTTGAGGACCTAGCCAAGGCATGGGGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99501 lncRNA upstream 344519 23920760 ~ 23926756 (+) False AMCG00010320
TU99463 lncRNA upstream 386468 23842459 ~ 23884807 (+) False G79749
TU99467 lncRNA upstream 417839 23851026 ~ 23853436 (+) True G79752
TU99462 lncRNA upstream 426691 23842459 ~ 23844584 (+) True G79749
TU99366 lncRNA upstream 573027 23688730 ~ 23698248 (+) True G79675
TU99553 lncRNA downstream 19704 24295388 ~ 24298215 (+) True G79827
TU99555 lncRNA downstream 24615 24300299 ~ 24301869 (+) True G79829
TU99580 lncRNA downstream 325448 24601132 ~ 24650632 (+) True G79846
TU99583 lncRNA downstream 448150 24723834 ~ 24727757 (+) True G79849
TU99600 lncRNA downstream 557425 24833109 ~ 24837388 (+) False AMCG00010333
AMCG00010324 mRNA upstream 19693 24251000 ~ 24251582 (+) True AMCG00010324
AMCG00010323 mRNA upstream 41501 24228548 ~ 24229774 (+) True AMCG00010323
AMCG00010322 mRNA upstream 56940 24197476 ~ 24214335 (+) True AMCG00010322
AMCG00010321 mRNA upstream 147652 24081293 ~ 24123623 (+) True AMCG00010321
AMCG00010320 mRNA upstream 261422 23926572 ~ 24009853 (+) True AMCG00010320
AMCG00010325 mRNA downstream 34677 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010328 mRNA downstream 338390 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010329 mRNA downstream 360473 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010330 mRNA downstream 397528 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010331 mRNA downstream 437963 24713647 ~ 24717375 (+) True AMCG00010331
TU99126 other upstream 1567866 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 1567901 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1892466 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1892466 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2223733 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 557425 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1716874 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1736800 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2104783 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3280731 27556415 ~ 27557007 (+) True G80249

Expression Profile