RNA id: TU99553


Basic Information

Item Value
RNA id TU99553
length 1795
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G79827
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24295388 ~ 24298215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGCTTAAATTTCACATCAACaatgacacttaaaaaaaatcataatggtTATATTTCCCAAGTCCTTAAACTGTATCGTTCAAATACTATTGCATACACCTTAAACAATTTCAGTGTCCAACTGAAAaagattaatgtaatttaaccttaaataatgaattttgACAATTTGTTTCTGTGAAAGAAGCAATGTCCCTCATTccacttttaaaatccttaGCTCTCAACTGGTTTTGGCCCATACCTGATCTGTGTACCAGTAGTAGGGggtggcatcaatgccttctcTCTTGTATCCCTCCAGCAGCTCTTCTGCGTCCCAGATACGCATCGATCCTCCAACGATCTCCCCAACATTGGGCATCAGAACATCCGATTCGGTGAGGCGGCGGTCCTCGGGACAGCGCTGCATGTAGAAGGACTTGATCTCGGCGGGGAAGCGGCACAGCAGAATGGTCTCATTGATAGTGTCAGTCATCAGTCTCTCTGGGGCTTCAGGGATGTCCTAGGAAAAAAGGAGGCAGCATTTATATTCTCATTCCAAACACGATTGCGTCCACAGATTCCTAGAGATGAGTGGCTCGTATATGGCAGAATAAAGACATCAATAAAATACGTTTTATGTTGGATTATTGAATGATTTACATGGACATTGTTttgctaaattatattttttagatggtcatttaataaaatacataacaaaataggtaaattacatttaaaaggaaatgcatcTCACCTCTCCAAATTCATAGTAAGTCCCATCATCTTTTTTTATATCATGCTCTTTGAGCCATGTGATGGCATCAGGGTAGTTCATTCTCTTGAAAGGTCTCTTGGGGGGCTTGAAATCGGGTTGATGTCATAGAGGAGACTGGCAGCAGGGGACTTCAGGACCCGATCGACCACATCACACACCAGGTCCTCCAGCCGGGTCAGCAGATCCTCATATGAAATGAAAGGGCACTCGGCTTCAATGTGAGTGTACCTGAGGAGGGAGGAAAAAGGGGTAATGGTATAGTCTACTTTTTACATGTACAATAACATCAGGTTCAATTGCTAATctacaaaataaactacaatttaTGCTACCAATTACAGAACTCCAGCTCCACCAAAAAGTTGTTTTGTCTGAAGTGAACTCTTATTCAGTAGATAAACTGAACGTGTACACTACTggacacccccatttttccagttttcatttaaatttaagcacagtttcctacaccaatcaaaaggcacttggaaactggaggaaactgacaggaagaggtctggcagacctaAAGCCACAAAataatcagaagacaagtttctgagagtcaacagcttgcgtgaTAGGCAGCTCAACAGCTTCAAggacagcttaacactggtcgaagtgagcaagtctcagtttcaactgtgaagagaagactttgagctgcaggtttgacggGTTGAGTGGCAGTAgggaaagccattgctaagatggaaaaaaaaagaaaaagaggcttgcctgggccatgaagcaccaccagtggactactgaagtcTGGAAGGAGGTCTTATGGAGCGATTAATCAAAACTTGAAATCTTTggttcatcacgcagggtttttgtacgccGTCCAGTAGACAAagggatggttcctcagtgtgtgacaccaactgttaAATATGGAGGAGgtaatggtctggggctcttttgctggatccagagtcggcgccttgcacagagtgagtgccaccctgaaccaaaacggctacccTCTGGTATACACCTAGTTgatcaggggttcatccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99545 lncRNA upstream 19704 24271275 ~ 24275684 (+) True G79820
TU99501 lncRNA upstream 368632 23920760 ~ 23926756 (+) False AMCG00010320
TU99463 lncRNA upstream 410581 23842459 ~ 23884807 (+) False G79749
TU99467 lncRNA upstream 441952 23851026 ~ 23853436 (+) True G79752
TU99462 lncRNA upstream 450804 23842459 ~ 23844584 (+) True G79749
TU99555 lncRNA downstream 2084 24300299 ~ 24301869 (+) True G79829
TU99580 lncRNA downstream 302917 24601132 ~ 24650632 (+) True G79846
TU99583 lncRNA downstream 425619 24723834 ~ 24727757 (+) True G79849
TU99600 lncRNA downstream 534894 24833109 ~ 24837388 (+) False AMCG00010333
TU99677 lncRNA downstream 700079 24998294 ~ 24998497 (+) True G79924
AMCG00010324 mRNA upstream 43806 24251000 ~ 24251582 (+) True AMCG00010324
AMCG00010323 mRNA upstream 65614 24228548 ~ 24229774 (+) True AMCG00010323
AMCG00010322 mRNA upstream 81053 24197476 ~ 24214335 (+) True AMCG00010322
AMCG00010321 mRNA upstream 171765 24081293 ~ 24123623 (+) True AMCG00010321
AMCG00010320 mRNA upstream 285535 23926572 ~ 24009853 (+) True AMCG00010320
AMCG00010325 mRNA downstream 12146 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010328 mRNA downstream 315859 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010329 mRNA downstream 337942 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010330 mRNA downstream 374997 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010331 mRNA downstream 415432 24713647 ~ 24717375 (+) True AMCG00010331
TU99126 other upstream 1591979 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 1592014 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 1916579 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 1916579 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2247846 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 534894 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1694343 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1714269 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 2082252 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 3258200 27556415 ~ 27557007 (+) True G80249

Expression Profile