RNA id: TU99583


Basic Information

Item Value
RNA id TU99583
length 3872
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G79849
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24723834 ~ 24727757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgggtttttaaaactttatttgcttgattaaaaaaaatagaaatacctTGAGTGAGTAACAttgggggagagaggaaaaaaaacacacaaaatgaacaaaaacattatCCATACATGTCATGACCTAGCAAAACCCACACCAGACTAAATGCATCCTGAAATGCAGTACACAGcctcaaacaaaaacaaacccaacaaAAAAGATGCTTTGCCACTAAAACATATATCCTTCAATCAAGTTAATCAAACTAAGCAAAACTGCTTTATGAGTTGACGGTGCAGTCTTTCAAATCTGTGGTAGGATCAGCTCACTGTAGGGAACAGTAGAAATGAACTGAACTTGTGAAGGGATACGTTGATCAGATCTACagataaaaataacactgactTTGTCAAAGCTCATTCTCAGGCTGCACATGCTAATGATGCATTGACGTACGTTTAGTCCAACCTGGCAAAATATCATTAGTGCTCACACTTTCAGGCATATCAATATTCAAAGCAtactgtttttcttcaaatacataaggaacattaaaaaactgctcaaaatgtttttctttaagataATGAAATCAATTTAAATCTGCCATATGgtaacatacatatacatatgtacatacatatgtgtatatatataaacatgtgtgtatatatatatatatacatacacacacacacacacacacacacacacatatatctatatatatttatttttttgcttcacttaatattttgatgcattaaaaatattcaGTAGTTCACAACTTTTACAAATAAGGTTTTACAGGATATTATTGGTCACATAGCATCACAGGCACAtaacagagaagagaaaattCCTCCAGACAAATGTAAACTTTTAAGAATGGCTATGAAGTCCAAATGCTGACATAAAACAAAGATTGTACATAGTTTTTCATAAGTCACATTTTTGATCCCCCGgaccccaccccaccccgccACAAAAAAGCTGATATTTCAGGATAAGATCGTGAAATTATCCAGTTGAGTTGCTGGGCACAATAAACGGGCTCCTACACTGGTTCTTTGGGATTCTGCAGTACAGCAGTACTCGGGAATACTTTacttataaaaatgtttacaggagctcaaaatttaattttctcaAAGCAGATAATGGCAGAACAAGGTCATCAGCTTAATTTGCTCTTTAAAAGAAAGTTAGCCGATTTGGTCTAGAGATTGTCACATTGAGGAGACTAACTGAACTAACTACGTACGGCACCCCTTCGACGGAGGGTTGGTGGCTGTAAGGTGGCTGATGTTGGATTTCCACCTGTTTGCATGCCTCCCTCCACCTCTTCCCaattaatatacaaacacattgtGGCCCCACACCTAAATTAGTGAACAAGAAGTTGCTGAAATCATCCTGTGGATGGGTGGAATCACTAAACTAACTAGTGAGgctttcaattttaaagaaGATGCACTTTAAAAGACACTTAAGCCAATGGGTTTCTTGGATAATATCTACTGGTAAACCAATGTAGAACAGTGgtcacaaatttaaaaatagttgcACGTTACCTATATCAAAATTAACAAAGTGTATTCTTTTTATACtattcaaagcttttttttatttgttgccATTTTATTGTTTGGTTGAAATTAACTAAACGCTCCAGTGTAATAATAAACCCACATACAGGGATTAGGTTTTGGAGTCTCTTGTGAACAGCAATTGTTATGTACTGTTGTAATCACCCTTTTATTGACTTCTAGAAAACAGAATATTGTTTAAGTATGACAGGAATACATGTTGGTCTTCACtacaaaagtattttgtaatgtaatacaatgtaCTATAGTGAGTCAGAAGAGCAAATATTTTACTGAAAGGAATACATTTCAGTGCAAGATCTCTTTCTCAGACATCTGCAACacgcatttacatttttaagttgttgtttttccaaattCTTATTGCCTTTCAAAATTGGTCACTGAACTCTGATAACTCATGTTTCCACAATACACTGAAAGAACAAGTTGATATTTTATAATGAGATCTTAAACTGTAATGAAAGAAATACATCACTGAACATATGAACACAGCTACAACTTTCAATACTGCCATCACCATCGTTTTCTATTTTTCCtgccttttaacatttaatatctaaaaacaaaacaaaaatctaaccTTTAAAAGTAATTCTAAAACAGACCAACCCAGGAACAAAATGGAATTATACATTATGTAGAGACTACAGGAATGGAAATATAGGCAGTACCGAGGTGTAAACGCTCATACTGGTGAATCATACACAGTATCTTTGATGTGTATATTCAAATTCCTAAACTGGCAAGGCCTCACATGCAAAGGCAGTTAATGTTGTATTGGCcgcaaaaatacatacataaatataattttggcTCACAGATCGCAACAACAAATGTGATTTAACTtcaataattttaaattgttataaaaTCAGTGAACAATACAAATGAAGACTTATGCCATTAAGTAATATAAAACTAGCCTAACATTGGGAATGGtagatttgcatttaatttttgcCTAGAGTATACTGTCCTGTCAAATAGCCAGAATAGGGCCACCTATGTAAGGCTGTGATCATCTGACCTCATctgatgtttaaattacattttgaaatattgattAGGTATCTCACAGTGCCTTACTTTCTACCACTGGAACTGGGGCCTTAAGCAAACCCTCAATAACACACATATTGAATGTGTTAACAGACTGAAAAGCCAGAACAAATTATTTATCTGAATGGCTGCTCTTATGGTGGTGTACACTGCAGAGGGATGGACCATGTTATTTTAGGTCTGAACAAGCTGAGAAATCCTTCAGCACATTACTGTATatgcattatttgtatgttCTAATGTTATACAAGTAACATGGCTTAATTTCAGGTGTGGTAACATTAATTACGAAATCCTGACACACACTTCTCAGCAAATAAAAATCCTAAACGTTTGGCAGGCAGACTTTCAACACGTTTTCACAGGTCCAATCCTCATCCAAGTCTCTTACTGCAGTGAACAACTAAGGTGAGGAAAGCAACCCTTAATGACAGAAAACAAGGATTTAAGCATCTCAATTTCAAACACTCCAGCTGCATAGGAAAACacttaataaatacagaatttgGAAAGTCAACAAGTTACGTGAAAAGGCTAGCTCAGTGATATTGGAAAGATTGAAGGCTACACGATCTCTGGGGAATCTGAGGGCAGCATGGGGGTGCAGGACTATTACATTAACAGGACAGTATATATGATATCAGAAATACTAACAAATGTAGTGACAATCAATCAGATACCCAAGCAAATTGTCAGGGAAATCAAGGAAGGCCTAACTTGACCCCAACAAGGCCGTCTAACACAGCTGCTTGGCTAGCTGTGCATATATAATCTGACTTATTTTATCGTATTCATGTATTGGTTTGTCCTCTTTACAGAGAGACTGCTGGGCGGGCAGTCTAACAGGCACACTTCTTCTCGGGGGCCTGCTCAGGCTCCAGTTTCCCAGACCCCCCCCCATTGGCAGGCTCCTGCGTGGGCTTTTCTACACATTGTTCCATGCGCTTCATCACCAAGTCCAGGAGTGTGATGACCGCCTTGTCCACCTCTGAACCTGTAGCCGCACTTGTCTCAAAGTAAGGTATCCTGTGAGAAGGAAAATGGAGACAGAAGAATGAAAAATTCACAACAGAGCCACAGGATATTTAAACCAAGTAGGGTGTAGTTCAcgcatttgtattttatttttagtggaATCAGGATTATTAAACTATGATTTAAGTAAATCGCCACCTTGATCTACAAGTATTCGTATACTACAGTAACATCGGACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99580 lncRNA upstream 73202 24601132 ~ 24650632 (+) True G79846
TU99555 lncRNA upstream 421965 24300299 ~ 24301869 (+) True G79829
TU99553 lncRNA upstream 425619 24295388 ~ 24298215 (+) True G79827
TU99545 lncRNA upstream 448150 24271275 ~ 24275684 (+) True G79820
TU99501 lncRNA upstream 797078 23920760 ~ 23926756 (+) False AMCG00010320
TU99600 lncRNA downstream 105352 24833109 ~ 24837388 (+) False AMCG00010333
TU99677 lncRNA downstream 270537 24998294 ~ 24998497 (+) True G79924
TU99709 lncRNA downstream 854561 25582318 ~ 25582575 (+) True G79952
TU99820 lncRNA downstream 1399326 26127083 ~ 26127308 (+) True G80032
TU99958 lncRNA downstream 1645895 26373652 ~ 26375356 (+) True G80138
AMCG00010331 mRNA upstream 6459 24713647 ~ 24717375 (+) True AMCG00010331
AMCG00010330 mRNA upstream 19009 24673212 ~ 24704825 (+) True AMCG00010330
AMCG00010329 mRNA upstream 81181 24636157 ~ 24642653 (+) True AMCG00010329
AMCG00010328 mRNA upstream 98536 24614074 ~ 24625298 (+) True AMCG00010328
AMCG00010325 mRNA upstream 406134 24310361 ~ 24317700 (+) True AMCG00010325
AMCG00010332 mRNA downstream 76383 24804140 ~ 24818166 (+) True AMCG00010332
AMCG00010333 mRNA downstream 105314 24833071 ~ 24837552 (+) False AMCG00010333
AMCG00010338 mRNA downstream 124030 24851787 ~ 24896459 (+) True AMCG00010338
AMCG00010344 mRNA downstream 717315 25445072 ~ 25445484 (+) True AMCG00010344
AMCG00010345 mRNA downstream 852671 25580428 ~ 25590886 (+) True AMCG00010345
TU99126 other upstream 2020425 22699809 ~ 22703409 (+) False G79475
TU99122 other upstream 2020460 22699742 ~ 22703374 (+) True G79475
TU99036 other upstream 2345025 22357969 ~ 22378809 (+) False G79420
TU99038 other upstream 2345025 22357969 ~ 22378809 (+) False G79420
TU98991 other upstream 2676292 22046118 ~ 22047542 (+) True G79382
TU99599 other downstream 105352 24833109 ~ 24837388 (+) True AMCG00010333
TU99797 other downstream 1264801 25992558 ~ 25996414 (+) True AMCG00010366
TU99785 other downstream 1284727 26012484 ~ 26026303 (+) True G80014
TU99961 other downstream 1652710 26380467 ~ 26394522 (+) False AMCG00010369
TU100084 other downstream 2828658 27556415 ~ 27557007 (+) True G80249

Expression Profile