RNA id: AMCG00010792


Basic Information

Item Value
RNA id AMCG00010792
length 2206
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00010792
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 114818 ~ 126599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGCATTGAGAGCAACCATGTGGCGCTTGAGCGCAGTCTTGTCCTGGTTGTCCATTCAGAGCTGAATAGGATGTCCAAACGCAGAGCATCGGAGAGGGGTGCAGGGGAGACCTCGGCCAGGGCCAGCAAGATCCTCTGCACAGGAATCACAGGAAGCAATGCCAAGAGAGCCGGGCCCTTCATACTAGGACCCCGGCTCGGGAACTCCCCGGTGCCAAGTATAGTCCAGTGTCTGGCCAGGAAAGATGGCACGGATGACTTCTACCAGTTAAagATCCTCACTCTGGAAGAAAGGGCGGACAAGGCCGTGGAGACGCAGGAGGAGCGCCAGGGCAAGATGCTGCTGCACACCGAGTACTCCCTGCTGTCTCTGCTGCACAGCCAGGATGGGGTGGTGCATCACCACGGCCTGTTCCAGGACCGGGCCTACGAGATCATTGAAGACCATGAAGCCAACAAAATCCGAAAGATGAAGAAGCGGATCTGCCTCGTGCTCGACTGCCTCTGTGCTCACGATTTCAGTGACAAGACGGCGGACCTCATAAACCTGCAGCATTATGTCATCAAGGAGAAGCGGCTCAGCGAGAGGGAAACCATTGTCATATTCTACGACGTGAAAAACATTGTTCATCGAGACCTGAAGCTCGGGAACATGGTGCTCAACAAGAGGACTCATAGAATAACCATCACCAACTTCTGCCTGGGGAAGCACCTGGTGAGTGAGGATGACCTTCTCAAGGATCAGCGGGGAAGCCCGGCCTACATCAGCCCAGATGTGCTCAGCGGCCGGCCGTACCGCGGGAAGCCCAGTGACATGTGGGCCCTGGGCGTGGTGCTTTTCACGATGCTGTACGGCCAGTTTCCCTTCTACGACAGCATCCCTCAGGAGCTCTTCCGGAAGATTAAAGCTGCCGAATACACCATCCCCGAGTACGTGCGCTGCTCGGCCCTCTTCATGGGGGACGGGCGGGTGTCGGACAACACTGTGTGTCTCATTCGCAAGCTGCTGGTGCTCGACCCCCAGCAGAGACTGACGGCGGCCGAGGTCCGGGAGTCTCTCAGCAGCATCATTGCATCATGGCAGTCCATGTCTTCTCTCAGTGGTCCACTACAGGTCGTGCCTGACATCGACGACCAGGTCAACCACCCCGAACATCTCCAGGAGAGCTCAGTACGCAAGGCCAAGGTGATGGAGGAGTCCTCGCAGTACGAGTTCGAGAACTACATGCGGCAGCAGCTGATCCTGGCCGAGGAGAAGAACACTATCCACGAAGCCAAGAGTTTCCTCCACAAGCGCCAGTTCGGCAGCATCCCCCCGGTGCGGCGCCTGGGCCACGATGCACAGCCTGTCAGCCCCCTGGACGCCGCACTCCTCGCCCAGCGCTTCCTGCGGAAGTGAGCCTCGGCCGGCGGTGCCGGCGCTGTGCCCGCGGGTCGGCCCATCGGAGCAATAGAGTCATGTAGCAGTCCACCCCCGCTCTATTGAGGATCCCTGGGGCCGCCGGCGCCCGTGGAGTACGGTCTGctcttttaattgaaatgatctAGATTAATTCTCTAATTGTGACTGTAAATCTACCTCTCTTCATCTTTTAATAATGATCCGGTCCTCAGGACTCGGCTCGCGAGACGGCGACGTCGGCAAAGCATTATCTTCGGTGCGTCTGGTAGTATGGAGTCTCACTGACCGCAGCTCTCCGTATGATCTGAATAagcttattttcctttttctacaATAAAGGTAGCATTGTTTTGGGTTGCGTGTTGTTTCTGGTCTTTTGGCAAGCCGCGTTTTAAAGACGCTAAGTATGGTGACGTAAAACCACCGTCCCACCCTGCGTGAGATCTGTAAAAGCACGGAACCGCTGTAGTCCTGTGCATCTGTGCAGAAACATCACGGGCTGCAGCGATGCAGAGCTGTTCAGTCAGGCCATGATTCTGTTCGGCTATGAAATCATGTCACGTGACCGCTTCCTGTAGCAGTGGACACGCATGTCTGTGTGCAAATATATAACAAACGTGTTGATTTAGGCAACCAACCTGATCTGGGGTTAATGGAGCCTCTTTAAAATGCCCGTTTGCCAAGGCAAGTGACCATTAGCTTCTCCTCTTTGTGTCGATTCACTTGTTAGTTTTTTCAAAGCTATACATAtaagtatgtgtatatgtatgtatgtatgtatgtatgtatatgtgtgtct

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K16312 STK40, SHIK; serine/threonine-protein kinase 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127800 lncRNA upstream 4751 131350 ~ 131582 (-) True G102332
TU127832 lncRNA upstream 160674 287273 ~ 287693 (-) True G102360
TU127834 lncRNA upstream 161150 287749 ~ 287971 (-) True G102362
TU127839 lncRNA upstream 360674 487273 ~ 487531 (-) True G102367
TU127844 lncRNA upstream 433835 560434 ~ 560797 (-) True G102372
AMCG00010795 mRNA downstream 2302 73277 ~ 112516 (-) True AMCG00010795
AMCG00010793 mRNA downstream 45223 43198 ~ 69595 (-) True AMCG00010793
AMCG00010796 mRNA upstream 380 126979 ~ 133324 (-) True AMCG00010796
AMCG00010790 mRNA upstream 7133 133732 ~ 134094 (-) True AMCG00010790
AMCG00010794 mRNA upstream 9770 136369 ~ 149730 (-) True AMCG00010794
AMCG00010791 mRNA upstream 24475 151074 ~ 156797 (-) True AMCG00010791
AMCG00010797 mRNA upstream 30891 157490 ~ 193075 (-) True AMCG00010797
TU127810 other upstream 19346 145945 ~ 149829 (-) False AMCG00010794
TU127921 other upstream 848954 975553 ~ 978127 (-) True G102434
TU127939 other upstream 907322 1033921 ~ 1034874 (-) True AMCG00010806
TU128333 other upstream 2613217 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 2631879 2758478 ~ 2761264 (-) True G102774

Expression Profile