RNA id: AMCG00010798


Basic Information

Item Value
RNA id AMCG00010798
length 876
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00010798
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 565231 ~ 577174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAAGGCCCTGTCCACGCGAATCATCGGTGGCATCTGGTGGTTCTTCACTCTCATCATCATATCATCCTACACGGCCAACCTGGCGGCCTTCCTGACGGTGGAGCGCATGGAGTCCCCCGTGGAGTCGGCCGACGACCTGGCCAAGCAGACCAAGATCGAGTATGGGGTGGTGAAGGACGGCGCCACCATGACTTTCTTCAAGAAATCCAAAATCTCCACCTTTGAGAAGATGTGGGCCTTCATGAGCAGCAAGCAGAACACGGCGCTGGTCAAGAACAACGAGGAAGGCATCCAGAGGGTTCTGAGGGCCGACTACGCCCTGCTGATGGAGTCGACCACCATCGACTACGTTACTCAGAGGAACTGCAACCTGACACAGATCGGAGGCTTAATAGACACCAAGGGGTATGGGATCGGCACCCCCATGGGGTCTCCATTCCGGGATAAGATCAGTATTGCCATTCTCCAGCTGTTGGAAGACGGCCGGCTACACATGCTGAAGGAGAAGTGGTGGAGGGGCAACGGCTGCGTGGATGAGAAGGAGGAGACCGGGCCGCTGGGGATACAGAAGATCGGAGGCATCTTCATCGTGCTGGCGGCCGGACTGGTGCTCTCGGTGTTCGTGGCGATAGGGGAGTTCATTTACAAGCTGAGGAAAACGGCTGAACGTGAGCAGAGGTCCTTCTGCAGCGCCATGGCCGATGAGATCCGACTGTCCTTCACCTGTGAGCGGCGTGTCAAACACAAGACCCAGCCCCCCGTCATGGTGAAGACTGACGCCGTTATCAACATGCACACATTTAACGACCGGAGGCTACCGGGGAAGGACAGCATGACCTGCAACACCGGAATGACTCCTGTGTTTCCGTAG

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127844 lncRNA downstream 4434 560434 ~ 560797 (-) True G102372
TU127839 lncRNA downstream 77700 487273 ~ 487531 (-) True G102367
TU127834 lncRNA downstream 277260 287749 ~ 287971 (-) True G102362
TU127832 lncRNA downstream 277538 287273 ~ 287693 (-) True G102360
TU127800 lncRNA downstream 433649 131350 ~ 131582 (-) True G102332
TU127918 lncRNA upstream 388788 965962 ~ 966216 (-) True G102432
TU127919 lncRNA upstream 397261 974435 ~ 974641 (-) True G102433
TU127932 lncRNA upstream 427943 1005117 ~ 1008128 (-) True G102443
TU127958 lncRNA upstream 572260 1149434 ~ 1151389 (-) True G102466
TU127962 lncRNA upstream 579382 1156556 ~ 1161075 (-) True G102470
AMCG00010797 mRNA downstream 372156 157490 ~ 193075 (-) True AMCG00010797
AMCG00010791 mRNA downstream 408434 151074 ~ 156797 (-) True AMCG00010791
AMCG00010794 mRNA downstream 415501 136369 ~ 149730 (-) True AMCG00010794
AMCG00010790 mRNA downstream 431137 133732 ~ 134094 (-) True AMCG00010790
AMCG00010796 mRNA downstream 431907 126979 ~ 133324 (-) True AMCG00010796
AMCG00010799 mRNA upstream 10682 587856 ~ 629893 (-) True AMCG00010799
AMCG00010802 mRNA upstream 358009 935183 ~ 943466 (-) True AMCG00010802
AMCG00010806 mRNA upstream 456656 1033830 ~ 1034790 (-) False AMCG00010806
AMCG00010807 mRNA upstream 464827 1042001 ~ 1056921 (-) True AMCG00010807
AMCG00010813 mRNA upstream 555596 1132770 ~ 1136837 (-) True AMCG00010813
TU127810 other downstream 415402 145945 ~ 149829 (-) False AMCG00010794
TU127921 other upstream 398379 975553 ~ 978127 (-) True G102434
TU127939 other upstream 456747 1033921 ~ 1034874 (-) True AMCG00010806
TU128333 other upstream 2162642 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 2181304 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 2602796 3179970 ~ 3182619 (-) True G102902

Expression Profile