RNA id: AMCG00010804


Basic Information

Item Value
RNA id AMCG00010804
length 2192
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00010804
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1034684 ~ 1040844 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGTTAACCTCGTCTTTCTGGactaaaTCCAGTCATAGAGCTGTCATTTGTAACCCTGTCATTTGTCTTGCAACAAAAACTTTATTGGTAATGATATGATTAGTTATTcccatttacaaatatttacccACACCAGATTTCCTgcaagaatacaaataaaaaaataaaagggtttGAGTGACGTGGTTGTAGCAGTAACCCGGAAGCGGTTGGGGAATTACGTAGTCCTTCCGGAGGAGCCAGGCTTTGCGCCGGCGCTGCCCATGCTGCCTGCCGTCCGACACTCCCGCACTGTCCTCCCGCCGGCCCGCCGCCGCAACTTCGCCTCCAGGCCGATAGTGAACCCGGCCGCCATGTGCAAAGAGCTGCGGACCCGGGTGCTGCGACTTGGGCCGCCGGCGCGGAACGGGCCCTGCGCCGGGGACACACTGCACGGCTGGAGAGAGATCCTGGACTGCACCGTCACTGCGCTGCAGGAGGGCCGTGTGGTCGCCGTGCCCACAGACACTGTTTATGGACTGGCTTGTCTGGCGCAAAATCCAAAAGCCATCGAGAGAGTTTACAGCATCAAGGGCAGGAACGGGCAGAAACCGCTGGCTATATGTGTGGGGGAGGTGGAAGAGATCTACAAGTTCTGTAAGGTGACCGTTCCGGACCCGTTGCTGCGGGAGCTCCTGCCGGGCCCGGTGACGCTGGTGATGGAGAGATCGGCCGAGCTCAACCCCGACCTCAACCCCTTCACCCCGTTGGTGGGAGTGCGGATCCCGGGTCACGCCTTTATGAGGAAACTGGCCCAGCAGTGTGGGGGTCCCCTGGCGCTCACCAGCGCCAACGTCAGCTCCCGGGCCAGCACCATCGCCGTCGAGGAGTTTCGGGACCTGTGGCCGTCGCTGGGCCTCGTTGTGGACGGCGGCCCCGTCGGTGAGGTCATGAGTCCGGAGTGCCGCCTGGGCTCCACCGTGATCGACTTGTCTTCCCCCGGCAGATACGGCGTCATCAGGCCAGGCTGCGCCCTCACGGCTACAGTTGAAATTCTCGAGAAGAAATACAGGCTCTCGCTCGAGACGGCGGGTCAGTGATTCTCGCTTCTGCTCGGCTTACTCTGCACCGCAGCGGGCTCTGGACGGAGCCGTTCTGTGGCCCGAATACCAGAGGGGAACGAGGGAAACGAGACTCTGTGCTCAGAGCCTGAAGGAACGTCTGGAAAGCTGGATTTCTGGGAGGAGACATGCGTCCCTTTCTGTGGAGTTACAACAGCCATCAAAACTGAACCCCCAGGACTTACCAAAACCTTGTGCACCGAATACTGGCCAAGCGATCTGGTGGAAGGAAGTATTTTACCTTGTTTCAGATAAAATGTGCTTTCCAAAATCCCCCTGTTCCCCAATGAAGACGACGAGGGGGTGAGGTTCAGGGGgaacgtttgtttgtttgctgcgTCTCTGGATTAAACCGatcttgtgtttctgtgttgaaCCTGCTGGACCAGGGAGGATAATTCCGCCTGTGGATATCCGTGATTCATGAGGgagttttctttgttaaaattGCTTGTGTTTTGGCTCCTCTATCGGCTCGTGGATATTGTATAtccctggggtggggggggggtgacttGGTTGGCTTTatggtgtatatatgtaatttaactGTGCAtggcatgtatgtatgttttgccTCAATGGCAGTGTAACAGGCAGTACAGAAGCAGGACACCTCGGCTATCAGGACGGAGTTAATTTTACCGCCTCTGAAGCACGACAACCCGAATCCTCACCTCCAGCTGGCCCCCGGGGGTGTAAATGGACATGCAGCAATTATTAATGTACTGATGTGATGCTCGATTGTACAGGATGTACCTATAAGGTGTGCTTCTCAAGATTCCTGTTTCTTTTAGCATAACTGACCATGTTTCTCCCCATTCCTGTCAACCTGGCCGACCTCTCGCCTTTCTCTCACTTTTGGGATGCATGTAGCTGCTGGATAGAGGATGTCCTTTGCAGAGCAAATTCATTACTATCTGTTGACTTTTAATAATGGGTTTTATATACCATTTTGGTTCAtctccatttatttattcccgtctggaaaaacacaataaatgatCAGGTGGATTATTATTCaagttgtgtttgttgtctCATCCTCATTAATATTCTTGTAGATCACCGTCCCATCTGGTGTGGCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127892 lncRNA upstream 68479 965961 ~ 966205 (+) True G102415
TU127871 lncRNA upstream 227460 806994 ~ 807224 (+) True G102396
TU127845 lncRNA upstream 471491 560886 ~ 563193 (+) True G102373
TU127835 lncRNA upstream 641631 392730 ~ 393053 (+) True G102363
TU127833 lncRNA upstream 746713 287752 ~ 287971 (+) True G102361
TU127905 lncRNA downstream 5558 1046402 ~ 1125183 (+) False AMCG00010809
TU128021 lncRNA downstream 434154 1474998 ~ 1475210 (+) True G102516
TU128023 lncRNA downstream 477555 1518399 ~ 1518698 (+) True G102518
TU128025 lncRNA downstream 506966 1547810 ~ 1548180 (+) True G102520
TU128059 lncRNA downstream 921902 1962746 ~ 1963952 (+) False AMCG00010830
AMCG00010805 mRNA upstream 6094 1012583 ~ 1028590 (+) True AMCG00010805
AMCG00010803 mRNA upstream 26529 977249 ~ 1008155 (+) True AMCG00010803
AMCG00010801 mRNA upstream 77453 951523 ~ 957231 (+) True AMCG00010801
AMCG00010800 mRNA upstream 109482 915734 ~ 925202 (+) True AMCG00010800
AMCG00010788 mRNA upstream 996461 35149 ~ 38223 (+) True AMCG00010788
AMCG00010812 mRNA downstream 53278 1094122 ~ 1099009 (+) True AMCG00010812
AMCG00010808 mRNA downstream 64339 1105183 ~ 1108360 (+) True AMCG00010808
AMCG00010809 mRNA downstream 67659 1108503 ~ 1125186 (+) True AMCG00010809
AMCG00010810 mRNA downstream 85889 1126733 ~ 1131681 (+) True AMCG00010810
AMCG00010811 mRNA downstream 98877 1139721 ~ 1147866 (+) True AMCG00010811
TU128036 other downstream 749344 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 757596 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 1011302 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 1029833 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 1029833 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile