RNA id: AMCG00010821


Basic Information

Item Value
RNA id AMCG00010821
length 411
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00010821
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1328879 ~ 1329908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCCTTGATGGCAGGAAGTCTTGGGTCCCTCCGGCCGCCCGGCGCTCTGAATGCTAATTTCCCGCTTCACCGCCTGGCAGAGCTGAATGTGATCCCCGTCCTCCCACCTCCCGTGCTTTTGTATCCTATGAGAGGAGTTTACAAAGGTCTCGgCGGCTGCACCTTTGATGAGGACTCGGACCCCAGCCTGTGTGAGTACAGCCAGGGCGAGGAGGACGACTTTGATTGGCAGCTGATTCGGACCTACAGCACACAGCACTCGCCCTCCGACCTGCTACACGGTAAGAGCACAGTACTGGGCCGGTCCAGTGCGAAGGATTGTGGGTTAGAAAAGGAGAATCTAGCGGAGCATTTCACCGGTTCTCTGGTGTCAGTGAGGCTCTGGTTGCGATTCTGTTTCACTTGA

Function

GO:

id name namespace
GO:0007185 transmembrane receptor protein tyrosine phosphatase signaling pathway biological_process
GO:0001757 somite specification biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005001 transmembrane receptor protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127905 lncRNA upstream 203696 1046402 ~ 1125183 (+) False AMCG00010809
TU127892 lncRNA upstream 362674 965961 ~ 966205 (+) True G102415
TU127871 lncRNA upstream 521655 806994 ~ 807224 (+) True G102396
TU127845 lncRNA upstream 765686 560886 ~ 563193 (+) True G102373
TU127835 lncRNA upstream 935826 392730 ~ 393053 (+) True G102363
TU128021 lncRNA downstream 145090 1474998 ~ 1475210 (+) True G102516
TU128023 lncRNA downstream 188491 1518399 ~ 1518698 (+) True G102518
TU128025 lncRNA downstream 217902 1547810 ~ 1548180 (+) True G102520
TU128059 lncRNA downstream 632838 1962746 ~ 1963952 (+) False AMCG00010830
TU128134 lncRNA downstream 844888 2174796 ~ 2175064 (+) True G102611
AMCG00010815 mRNA upstream 73875 1248337 ~ 1255004 (+) True AMCG00010815
AMCG00010814 mRNA upstream 116909 1208890 ~ 1211970 (+) True AMCG00010814
AMCG00010816 mRNA upstream 168452 1156657 ~ 1160427 (+) True AMCG00010816
AMCG00010811 mRNA upstream 181013 1139721 ~ 1147866 (+) True AMCG00010811
AMCG00010810 mRNA upstream 197198 1126733 ~ 1131681 (+) True AMCG00010810
AMCG00010820 mRNA downstream 32989 1362897 ~ 1368868 (+) True AMCG00010820
AMCG00010822 mRNA downstream 49089 1378997 ~ 1418967 (+) True AMCG00010822
AMCG00010823 mRNA downstream 98736 1428644 ~ 1452530 (+) True AMCG00010823
AMCG00010824 mRNA downstream 127582 1457490 ~ 1457729 (+) True AMCG00010824
AMCG00010825 mRNA downstream 128921 1458829 ~ 1459989 (+) True AMCG00010825
TU128036 other downstream 460280 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 468532 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 722238 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 740769 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 740769 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile