RNA id: AMCG00010824


Basic Information

Item Value
RNA id AMCG00010824
length 240
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00010824
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1457490 ~ 1457729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGGAAGCTAGTGTTGGACAAATCCTTTCTAAAACGTGTCCCTGTCTTGACCTCCGTCCTGTTTTCCCCCCAGCTGCAGGAGGGACACCTGGTGGTGCGTCAGTTCCAGTACCTGCGCTGGTCAGCCTACCGGGAAGTCCCCGACTCCAAGAAGTCCTTCATGAGCCTGCTGGGCCACGTGCACAAGTGGCAGAGGGACTGCGGGGAGGGCCGCACCATCGTCCACTGCCTGTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127905 lncRNA upstream 332307 1046402 ~ 1125183 (+) False AMCG00010809
TU127892 lncRNA upstream 491285 965961 ~ 966205 (+) True G102415
TU127871 lncRNA upstream 650266 806994 ~ 807224 (+) True G102396
TU127845 lncRNA upstream 894297 560886 ~ 563193 (+) True G102373
TU127835 lncRNA upstream 1064437 392730 ~ 393053 (+) True G102363
TU128021 lncRNA downstream 17269 1474998 ~ 1475210 (+) True G102516
TU128023 lncRNA downstream 60670 1518399 ~ 1518698 (+) True G102518
TU128025 lncRNA downstream 90081 1547810 ~ 1548180 (+) True G102520
TU128059 lncRNA downstream 505017 1962746 ~ 1963952 (+) False AMCG00010830
TU128134 lncRNA downstream 717067 2174796 ~ 2175064 (+) True G102611
AMCG00010823 mRNA upstream 4960 1428644 ~ 1452530 (+) True AMCG00010823
AMCG00010822 mRNA upstream 38523 1378997 ~ 1418967 (+) True AMCG00010822
AMCG00010820 mRNA upstream 88622 1362897 ~ 1368868 (+) True AMCG00010820
AMCG00010821 mRNA upstream 127582 1328879 ~ 1329908 (+) True AMCG00010821
AMCG00010815 mRNA upstream 202486 1248337 ~ 1255004 (+) True AMCG00010815
AMCG00010825 mRNA downstream 1100 1458829 ~ 1459989 (+) True AMCG00010825
AMCG00010826 mRNA downstream 393055 1850784 ~ 1859425 (+) True AMCG00010826
AMCG00010830 mRNA downstream 487326 1945055 ~ 1963965 (+) True AMCG00010830
AMCG00010831 mRNA downstream 521890 1979619 ~ 1986242 (+) True AMCG00010831
AMCG00010832 mRNA downstream 581785 2039514 ~ 2064344 (+) True AMCG00010832
TU128036 other downstream 332459 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 340711 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 594417 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 612948 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 612948 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile