RNA id: TU128110



Basic Information


Item Value
RNA id TU128110
length 742
RNA type TUCP
GC content 0.60
exon number 4
gene id AMCG00010834
representative False

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2070677 ~ 2073242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCAGCGACGACCGCGATGCTTCAAAATGCAGCCCCGGAGAGAGAGCCGGGCCGGCGCACAGACGCGCTTTGTCTGCGTGTTGGTGTCGTTGTAACTGTCGCATCGGCTCCCGTCACTCACGGTCTGCTCCGTCTGTCCGGGACAGCGGCGGGGCGAGTGAAAGCGCCTTTGTTTGGGTCTTTCTGGGGATTCGCTCTGGGACGCCAGCTGTCGCGAGTGACGTCATCTTCGGGCGACGCCTTGGCTGCATGTGGCAATAAAGCCGCTCTCGGTAGCAGCTGTGCGCGTCGCTTGTAGAGCTGCTGGGATTAATATGCTCGATGTTGCTGCTCTTTCCATCGAGACAAGACTGTCATTAGACTAAATATAAAGAGGAGTCACAGACGCACATTGACGGGATCGTTGCACCCGGGACTTCAACGAGTTTCTCAGCACTTCTGGTTGTAGACAGCAACCATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCATCTACACATTCGGCTGCAACGNNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128059 lncRNA upstream 107454 1962746 ~ 1963952 (+) False AMCG00010830
TU128025 lncRNA upstream 523226 1547810 ~ 1548180 (+) True G102520
TU128023 lncRNA upstream 552708 1518399 ~ 1518698 (+) True G102518
TU128021 lncRNA upstream 596196 1474998 ~ 1475210 (+) True G102516
TU127905 lncRNA upstream 946223 1046402 ~ 1125183 (+) False AMCG00010809
TU128134 lncRNA downstream 101554 2174796 ~ 2175064 (+) True G102611
TU128145 lncRNA downstream 178861 2252103 ~ 2252470 (+) True G102622
TU128151 lncRNA downstream 243695 2316937 ~ 2317570 (+) True G102628
TU128193 lncRNA downstream 375958 2449200 ~ 2449881 (+) True G102655
TU128248 lncRNA downstream 550364 2623606 ~ 2660858 (+) True G102693
AMCG00010833 mRNA upstream 1906 2067665 ~ 2069500 (+) True AMCG00010833
AMCG00010832 mRNA upstream 7062 2039514 ~ 2064344 (+) True AMCG00010832
AMCG00010831 mRNA upstream 85164 1979619 ~ 1986242 (+) True AMCG00010831
AMCG00010830 mRNA upstream 107441 1945055 ~ 1963965 (+) True AMCG00010830
AMCG00010826 mRNA upstream 211981 1850784 ~ 1859425 (+) True AMCG00010826
AMCG00010837 mRNA downstream 285271 2358513 ~ 2363722 (+) True AMCG00010837
AMCG00010838 mRNA downstream 290968 2364210 ~ 2368559 (+) True AMCG00010838
AMCG00010847 mRNA downstream 536031 2609273 ~ 2615203 (+) True AMCG00010847
AMCG00010846 mRNA downstream 569131 2642373 ~ 2644326 (+) True AMCG00010846
AMCG00010853 mRNA downstream 657788 2731030 ~ 2732094 (+) True AMCG00010853
TU128102 other upstream 15059 2052146 ~ 2056347 (+) False AMCG00010832
TU128040 other upstream 270655 1798440 ~ 1800751 (+) True G102535
TU128036 other upstream 279683 1790188 ~ 1791723 (+) True G102531
TU128314 other downstream 683060 2756302 ~ 2761509 (+) False AMCG00010854
TU128591 other downstream 1236496 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 1258342 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 1258477 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 1290025 3363267 ~ 3398506 (+) True G102921

Expression Profile