RNA id: AMCG00010840


Basic Information

Item Value
RNA id AMCG00010840
length 941
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00010840
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2332216 ~ 2336743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCATGTGAAGTAAATGCAATGGTTGTTAACCCAACTGGTCCGAATCCATGCCgtgattttttttacaataatattgAACCTGTTTTGGGAGGATTGCAGAATCCTGTAAGAATCTGCCAGATCCACAATAATACACCTCGGTTTGCCACATTGTATGACAGATTAAGGCGTATGCCAGCGTACTCTGCTTATATATTCAACGCGAAAACATCAAGCTGTCAGCCAGATCGACTAAGTACCTGGTTTATTGAACCACAGcttGCAGATAACAATTGGATTGGAGAGTCAATGACAGTAAATTACCTGTACCAGCAATTGGGAAATAAACCAGAAAAGACTGTTTTCAAGCAAAAGATTTTTGATAGTCAAGCAACCAATTGCGATTATGAAGACTCTGGCTTTGACCGAGGACACCTCAATCCCAACTGCCATCAAGATGGTGAAGGCCGTACTGCTACCTTCACTCTAACCAATGCAGTGCCGATGTATGAGGATTTCAATCGTAAAATTTGGTACTCGCAATATGAAAACATTGTAAACAATGAACTTAAAAAGAACTGCACATCACCTAGTATTGGGTACATTGTGGTTGGTGCTGTTAGTTCTCAGACTATTGTCAATAATCGTCTTTATGTGCCCTCTTTAATATGGGcagctgtgtgctgtcactctgTTAAAAATTCATTTAGTTTGGCTTTTTGGGCAGATCATTACCCACGTCCTCAACAATATAAACGAGGAGGTGTGTGTCGGCCCTGCTGGGGTCAGAGAGGGGCGCGCGTCTCACAGCAGGAACAACATCGAGGAGCGATAAATCAGGAGTGGAAGAGTATGCACGCCTCGTGGACGGAGCTGCTGCCGAGACAGCTCCCTTCTCCTCACAAGCTCAGCAATCAAACTGATAAGGAAACCCCTGCAACTGCAAGAGAATTCATCCTT

Function

GO: NA

KEGG:

id description
K15049 ENDOD1; endonuclease domain-containing 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128152 lncRNA downstream 14952 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 79749 2252119 ~ 2252467 (-) True G102623
TU128138 lncRNA downstream 154700 2177276 ~ 2177516 (-) True G102615
TU128132 lncRNA downstream 160415 2171530 ~ 2171801 (-) True G102609
TU128080 lncRNA downstream 368263 1962282 ~ 1963953 (-) True G102572
TU128166 lncRNA upstream 26137 2362880 ~ 2363110 (-) True G102639
TU128189 lncRNA upstream 49980 2386723 ~ 2437698 (-) True G102651
TU128213 lncRNA upstream 145154 2481897 ~ 2488417 (-) True AMCG00010843
TU128289 lncRNA upstream 337820 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 452727 2789470 ~ 2833183 (-) True G102785
AMCG00010835 mRNA downstream 149744 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010836 mRNA downstream 151719 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010827 mRNA downstream 495331 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010829 mRNA downstream 531456 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 535624 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010839 mRNA upstream 28730 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010841 mRNA upstream 105484 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010843 mRNA upstream 145131 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010842 mRNA upstream 163062 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010844 mRNA upstream 169977 2506720 ~ 2519791 (-) True AMCG00010844
TU127939 other downstream 1297342 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1354089 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2182387 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 403073 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 421735 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 843227 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 984070 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 989115 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile