RNA id: AMCG00010842


Basic Information

Item Value
RNA id AMCG00010842
length 2279
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00010842
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2499805 ~ 2502500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAAGGCGTTGCGTCATACGTAAACAGGAAGTGCGCTGAGTGGCCTTCATTGCAGCCGGCAGGGAGGCGTTGTAACTATTAATCGTCATTATTACAGGCTGAAATGGTGCCGGCATTGCCGAGCTGATGTGTGTTTCACCGCAGAAAGCGGAACAAATGCCTCTGAAGTTTCTGCAAACTGGCAAACGTGTATCGACGTCCGGGCGCCGCGCCGCGGGAGACCGGGGCGAATGAAgcaaaggCGGTTGGTGTGACGCTGGTCCACGCAGGACGCGCAGCCGGTCCCGTGTGAGGCGCGGATGGACGTGCGCAGCGTGGCGCGGTTCGGCCTCTTCTCCAGAGCGCTGGCCCTGGCGCTGCAGGCCGTGTTCAACGCACTGATCCCGGACCACCAGCCGGACGCGTTCAGCCCCCCGCGGGCGTCGGAGCCGCAGCTGCTGGACTCGGTGGTGGAGGGCCTGCTGGGGGGTCTGTCTCGCTGGGACGCCGAGCACTTCCTCTTCATCGCCGAGCGCGGCTATCTGTATGAGCACAACTTCGCCTTCTTCCCCCTGCTGCCGCTGAGCCTGCGGGCCGTGGCGGGCGCGTTGCTGTGGCCCCTGGCCGGCTGGCTGAGTGTGCGGAGCCGGCTGCTGCTGGCCGTGGCGCTGGTGAACGGGCTGCTGGGCGTGCTGGGCGCCGTGGCTCTGTACGGACTGGGCCGCGTGGTGACGCAGGACCGCCGCCTCGCCTACTACGCCAGCCTGCTGTTCTGCCTCACGCCGGCCAGCGTCTTCATGGCGGCCGGCTACTCCGAGAGCCTGTTCGCCAGCTTGGCGTTCGGGGGCATGTGGCTGCTGGAGAGGGGCCGCACCCTGAGCGGCTGTGGGGTCCTGGCCCTGGCCACCGCCGCCCGCTCCAACGGCGTGGTCAACGTGGGCTTCCTGCTCTacctgcagctgcagcaggcGCTGGGCCGGGCCCAGCTGCTGCGAGGGACGCCCTGGGGGGTCTGCAGGGGCCTCCGCTACGCCGGCATCGCAGTCTGCTTCCTCCTGAAGGCGGCGCTGGGGAGCTCCGCCATCCTCCTGCCCTTTGGTCTCTTCCAGTACTACGGCTACCGGACCTTCTGCACTCCCACCATCGGACCGGAGCAGATTTCCCCGGCTCTGCTCGAGCTGGCGGAGCTGAAAGGTTACCGCATCCCTGACACGACTAAAGCCCCCCCCGCCTGGTGCCAGTGGCCGTTCCCAGTCCTGTACTCCTACATACAGGACGTCTACTGGGATGTGGGCTTCCTCAGGTACTTCCAGCTCAAGCAGCTGCCCAACTTCCTGCTGGCGCtgccggtgactgtgctgggcGGCACGGCAGCCTGGCAGTACTTCCGTGCCGATCCCTGGCTGTGTTTGCAGCTGGGCCTCCTGGGAGAGCCGCTGAGGAAGCGCGGAAGAGCAGAGGGGGACCGGCCTGCCGCTGGGTTCCGCCACCCCCGCGTGTTTGTGTACGTGGTCCACGCCTCGGTGCTGCTGGTGTTCGGGGGCCTGTGGATGCATGTGCAGGTGCTCACCAGGTTCCTGGCCTCCTCCTCCCCGGTCCTGTACTGGTACTGCGCTCACCTGCTCGACAAGAATGAGCCCTGGCTCCGTGCCCCGAGAGACGGCGGCTGTGAGGGGGAGTGTGCGGCCCCGGGGCGGCCCTGTGTTCGGTGCCGGACTGGCGCCGTGTGGAAGGGCCTCCCCAGGAACCCCCTCACACGGCTGCTGTGCCACTGGGGGGCCTGCTCTCCCGTCAGCCGCTGTGTGCTCGGCTACTTCACCTCCTACTGGCTGCTGGGCCTGGCTCTGCACTGCAACTTCCTTCCCTGGACCTGAGGGGGTTCAGGCCCGCAGAGGAGAAGACGAGACTCGCCTCCGAAGCCATGGCGAGGGTGTCCGTCCTTCACGCGGCGCTGCCCCTGCTGGAGACCCGGTGTCGCCCCCCGCGCGGTCTCGTGATCCTCCACAGACCTGCCACGCGCCCACACGCTGGATCGGGCTCCCCCAGCCGTCACTCTGAAAGTGCGGCGGACCCCCTGCCCCGGGCTGCCCTCCCGCACTGACGGGCCTGCACTGAGCGACAGCATGCAGCACGACTACTACACAACCACTACTGCACTAAGATGCGCTGTCAACACCAGCActgctctctgtgctgtgcaCGACTCGGGGACGAGGGGTTGTAACACGGCTgcgaaataaaaacacaaagaacgTTTGAAATGCCTCTGATGCTTTATATTCACCCAACAATCTGCAC

Function

GO: NA

KEGG:

id description
K07542 PIGV; GPI mannosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 11388 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 62107 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 136695 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 182541 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 247338 2252119 ~ 2252467 (-) True G102623
TU128289 lncRNA upstream 172063 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 286970 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 452260 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 488147 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 642764 3145264 ~ 3145687 (-) True G102887
AMCG00010843 mRNA downstream 3359 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010841 mRNA downstream 50251 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010839 mRNA downstream 117560 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010840 mRNA downstream 163062 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010835 mRNA downstream 317333 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010844 mRNA upstream 4220 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010845 mRNA upstream 34698 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010852 mRNA upstream 117461 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010850 mRNA upstream 122503 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010849 mRNA upstream 127974 2630474 ~ 2638055 (-) True AMCG00010849
TU127939 other downstream 1464931 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1521678 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2349976 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 237316 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 255978 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 677470 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 818313 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 823358 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile