RNA id: TU128213


Basic Information

Item Value
RNA id TU128213
length 4999
lncRNA type sense_over
GC content 0.51
exon number 2
gene id AMCG00010843
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2481874 ~ 2496446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcctcctctccctccagtAGTGTCTCCACACACAGGCAGCGGTGTCCAAGAGACGGGTCTGTCAGTGGGGCACAGTGGGGGCGGAGTCTTTCGTCCGGGGGCGCTGCTAGCTCGTGCCCCCAGTCTGCTCAGATCTGTGGGTCAGACGTCTCCCTCCGGGCGAGAGCTCTGTGTTGAGACCCCCGCGGACCGCAGAGGGCTGGACAGAGTGGGGTGGATAACGGTGACCCCCGCTGACGgatgtgaaagtgtttgtttacAGACTCATAACTCTAGTGTTcaattcatttctgttttatcaTCCTGTTCCTTAattcattattgtgtgtgttgtgtggtggAAAGTCTGAGGATGACttaattctgtttattatttcaaaacgtattttatttgcttctgAAGCATTTCATTCTTTAGTATTCTTATGATTAGTGGAAGAAAGGCGTCCCTGACAGGAATCGGGCTCGCCGCTCCCACTGGGATTTTCGTTACAAACATTTTGTTCAACCGAAGATGTAAACGACCCCAACGACGTCAGAGCAGCCAGTCTGAGATTTATTCACCCACTACAGTGTGAAACCCTCTCAGAGCGAACGGCGGCCAACGCACAGAGCGCGGATGACTCCCTCCACACAGACGcggcctaaaaaaaaaaaaaaacggaaagaCTGGACTGCGTGTCCCGGCTGTGAGAGATGAGAGATGGACCTCTGGTTTGGTTTTGAGTTTGGTTCTGGTTCAGACGCCTCTTCTCTCTGACAGCAGAGACGAGACTGAGTCACTGGGGTCCGAGGTCGTTAAATTCTCCCTTTTCAATCTGCAGTTCCTGAAACTACAAACTTCCtcttgtttacatttaaatgtatataatgtgacaGTGTTTAATCTTGGCTAAACTTTGCTCGTCTGCCTCAATTGTCAATCTTACAAttgtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggatcTGCAAAACCACTTTCACATAAAGTAAATGCACCACAAAAAGAGGCAACAAAATACCTCGCGGAAAATGACTTGACTGTAAGTTGTGTACGGCTTGACTGTACAGCTCTGGTTGGCTGTGGTGTCGGGTGTTCATTACTGCATTGTTTTGGGTGGAATGACCGGGAGAAATTGAGTCTGTAGAGAGGTGGACTATAAAACATTCTGGGCCTGATTTAATTAGAAGAATACCAGGGTAGTTTATCCAGCTCTACCGAAGCGCTCCGGAGACGGCCTGTGGGGAAGCCTCGTCTGCGTCTTTTCTACAGAACACGGTGTCCTATAGGAGATGACTCCGTTCGGTTGAAGGGCACCTACGCAATGTCCGTGAACGTCAATCTCACGTCTCCTTCGTCTTATGTTCTCTCTCTGGCCTGGGATGGAAATGTTTCTGAATATCAGTTACACAACTGCCGAACACAACCCTGAACTTCACACAAGGGTGACACAGTCTTGCGGCCTCAGTGGTGCGATTACAACAGTCTGGGCCCTGTCCTGCCTCGGGATCAGTTTGACAGCAGGCGTGGACGTCTCCCTCGTGCAGCAGAAGATCAGTTGTGAAAAAGACGGTGCCACTCTGAGCTGGACCGGCCTGGACCGCCGCACAAACAGCCCTCCTCTGTCTACCTCACCATAAGGCTGGCCTCAGAGGGAGTGAGTGGGGTGCAGATTCTGCCCGTCTGAAGGAAAGGGCTCATCtgatgtgttatttttgtgtctCTGTTCCACACGACGGGAGGCGTGCAGAGGAAGCCAAGGTTCGGCGGTCGTTGGCTTCCCCTGCAGCTGTCGTGGTTTTCGTCTTGCGACCTTTTCGCCCAGAGATTTCATTAGCAAGGCAAATAAAGCGCGAAGAAGACAACTTCCCTACTGCCCGGGGGAACGGCGGTTATTTAGGAGACATTCTGCAGGGCGGGAGGGTTGATACGGGTTAAAAGAAGACGGAAGGAATCCCTCCGTTACTCGACAAGGCACATTCTGCTCACGGTCCCGGACAGACGAAGACACGTCGatagcattttgtttctgtgtctcgTCGTTGTCGTTGAGACCGTTGAGACCATTCTCAGGGTTCAGTCCTTTCATGTGATGTAGAGAAACTATTTTTTATACAGGAAAGTGTAAATCTACTCCCCGCAACATCCCCTTTTCTGTCCTCACTGCATGGCTCATATTGTCACATCTGTTCCCGTTTAAACTGGCCTCATTTGCATTTGGCTTCGCCTTAAAGTGTTGCTGCTCATCGTTGTTGCCGAATAGCATGTTTCAAAATcggctttatttttgttttgccttttaatgtcaaaataaaacGTTCTGAAATCCCACagcatgtttattttccctttacCCCCCTACTGTTTTTTTAcctctcttttttgtttgctttgtttggttttgaaagCCAAACGTGTGACTGGAGGTTACTTTTGTTTAGATCTGTGGATGCGGCTCAGCCCTTCGAGAGACAGTGGCTGGTTTTCTGCTCCGTCCATGTGACGGGACGTTTGCAGAAAGACACTTGCTGGGGAAATAGAGACGGGTGGAAAGTGCGTTTGTTGTTTATAGTGTTACTTTATGAGAACTGTCCTCTCTGGTGCGCTCCTGCTTCTTCCTTGTGTTTGTTAACTTCCGAGTTTGATCACCTGGCTTCACTGACCTCTGTGTGGAGCAGAGTGTTTATTAATCAGGGGTTTTAGTCCTGCCAATGGGATGTTCATCTTTTCTGGGTTTgtgctgcgtgtgtgtgttactgttgtATGTTTGGAGATtgttggggtgtgtgtgttaatgttatATCCTGTGAGATTgttgggttgtgtgtgtgcgtgtgtttgtgttaaatacTTTGAGATTGTCTGCTTGTTTGTGAGTGTTTGTTAGTATTATATGCTTTGAGATTGTTGGCtggcgtgtgcgtgtgtgtgtgtgtgggtatgttTGGCTAATCTCTGGGGGTGATTAACGTGTGGCTCTTGTGGTGTCCCCTGTAGGAGGAGAATTGTCAGGATTTCGCTCTGTCTTGCACAGCCTGATGTGGTAGTTGACATTATTAGCCCGTGCCGCTGTCGGAGGGGAGCCGTGTACACAGGGCACTAAAGACCTCTGGGCGACGGCCGCCCGCTCGCCGCTCCTGACCGGCCCCTGCTCGCCCCGGAAGCTGAAGCCCACGCCTGAGCTCGGGGCCTGCCCTGCTGTCGGAGCCCCCGGTCCTgctgccctctccctctcgccGTCCCATTGCGCTGGGGGGGCGGGGAGGCTGGCACCCCCGAGGAGCAGCACAAGCCCACGCCCCTGCACCCCGATAAGAGCCGTGGCCCGCGTGCCCTGGGGCTCCCGGCTCCGTCTGCCTCCACTTTCCTTATCTGACGTGGGACTGAGTGGGCAGTGAAGCGAGTACTCCTCTTCCACCGCCTCTCGATGTGAAACCGTCACACAGGCCGTCCCGGGGCCCCCACGCTTGCCTGCTCATCGAAGACCACTGGTGTAGCTGGGGACCTTCTGTTTCTCAAAGAAGCCTGGGACCTTTTGTCTCGAGTGCTGGAGCACAGTGAAGTGATAATGGTGACCTACACTAATTCACGGGTTTGGCACTCAAGCGTCGTACATCCTGTAGCCTTACgcagggaggtggggggttgcCATCTCACTGCCCAGGTCCTCTCGTCTGCAGGAGAGCGGAGCGGGCGCGGCTCCGGCACCGAGACGGGTGGGGCTGGCGGAGGCCCGGGGGCAGGCCGGCGTGGAGCGGCTCTCATACCTAATCCCAGGATCACACCCTGTCCCGGCCCACaccttttctattatttattttttatttcttggcagacgcccttatccccTTTATAAGCACAAAGACGCGCACGCATAGATGTACACGTTTCTATAGATTCTCCCACTGGTGTTTGTTTCCAGTGGATGCAGAAAATGCCTTGAGCCATATTTTCTATCGCCGGGAAAAACTGTCACGCCCCGAGTCTGCGACGGACCCGAGGGCCCGTCCGTCTCGCAGCTGGCTTGTCCGGGTCTCTTCGCACAGCAATAACAGAGCAGCCCTGCAGAGAGCGTGCGTCGCAGCTCCTCGCCCCGCGGGAACGGGTCATGTAGTGAGACATCCTCCTGTCAAGTCACCTTACTTGTGTTCACGCGTTTTGATTCAATAAGTCCTGGACTGGGCTCCCTCTGCTGCTAGGACACGTTACTGCACAACCCTCCTCCTGCGTCGTTCTCCAGCACGGTCTTCCCTGGACAGCGGACGCTATACGGGCCTGCTGAATTTTGCCGTCCCCGTTCACGACCCTTCTAGACCCCGAGAGGTggtcaattaatttgttttcatgcatagtgtttgtttttcacggGAGATCCCTCCAGGGGACTTCAATATCTGTCCCGCCTCTGAAGGCCAGAGGTTTTAAAGGATTTTATCTTCATTTGGTGGTGTGCTGTGATTTTCCCCCCCGTGTGTGATTTGTGAAATCGGCCCAGATTTGCAGCCCACGCCTCGTTTGAGAGGCTTTACGGGAGGGTGTGGGATTAGACTGAGAGATCtacttattgttttatatacttGACTGAATGTGTGATTGACTGTATGCGTTTGGCGTTTTATTATAAGCCATTTCCATATCCCTCGCACCGATGATGTAGACTAACACTGACTACCTGACTAGACGACTTAGCGGCCCTTCAAACTAACACTGTCCTTTCACAGCATCACAGCAGTGTCGTCTGGCACACAGTAGCGTTGGGAGTTGGTGGCCGATTAACCATCAGCTTGATTTATTTGTTGGTCTGCCGAGTTTcctctttaaaatgcaaacttcACAGACTTGTCTTTCCACCCGAATAAGGTTTGCCAAAATCATTCCCAGCCCGATGCTGAGGAGCTGGTAAGtggattaaaaaggaaaagcaaataTGTGTGTtatgcttgtttattttgtgtgagtCCTAAGGACTTGCTGTATGAACCTTCATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128189 lncRNA downstream 44199 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 118787 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 164633 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 229430 2252119 ~ 2252467 (-) True G102623
TU128138 lncRNA downstream 304381 2177276 ~ 2177516 (-) True G102615
TU128289 lncRNA upstream 186146 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 301053 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 466343 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 502230 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 656847 3145264 ~ 3145687 (-) True G102887
AMCG00010841 mRNA downstream 32343 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010839 mRNA downstream 99652 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010840 mRNA downstream 145154 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010835 mRNA downstream 299425 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010836 mRNA downstream 301400 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010842 mRNA upstream 11388 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010844 mRNA upstream 18303 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010845 mRNA upstream 48781 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010852 mRNA upstream 131544 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010850 mRNA upstream 136586 2625003 ~ 2628517 (-) True AMCG00010850
TU127939 other downstream 1447023 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1503770 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2332068 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 251399 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 270061 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 691553 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 832396 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 837441 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile