RNA id: AMCG00010844


Basic Information

Item Value
RNA id AMCG00010844
length 5109
RNA type mRNA
GC content 0.65
exon number 16
gene id AMCG00010844
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2506720 ~ 2519791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAATGTACTCGCAGGCTATCACAATGGCAGggcttttctccctctccctcggcTGACCCCCATCTCCCATCTCGCTCTCCAGGATCTGTCGGGCTCCATCGATGACCTGCCCACCGGCACCGAGGGCGCCCTGAGCCCGGGAGTGAGTACCTCAGGAGTGTCCAGCAGCCAGGGGGAGCAGAGCAACCCGGCCCAGTCTCCCTTCTCCCCACATACCTCCCCCCACCTGCCGGGCATCCGCGGGCCGTCGCCCTCCCCAGTGGGCTCCCCCGCCAGTGTCACCCAGTCCCGCTCAGGACCCCTATCCCCGGCAGCTGTACCAGGGAATCAGATGCCCCCCCGACCTCCGAGTGGGCAGTCGGACAACATCCTGCACCCTTCCATCAACCAGACTGCCATGGGCCAAGACAGAGTGTACATGCAGAGAAACCCCCAGATGCCTGCCTACGGCTCCCCACAGCCTGGCTCCGCCTTATCTCCACGCCAGTCCTCAGGAGGCCAGATGCATGCTGGGATGGGGCCTTATCAGCAGAACAACTCCATGGGCAACTACGGGCCTCAGGGTGGCCAGTACGGGCCGCAAGCTTATTCCAGGCAGCCAAACTACACTGGCATGCCCAGCACCAACTACCCCGGGCCTGGTATGGGTGGCTCAATGAACCCCATGCCGGGGCAGGGCGGTGGGCCGCCATATACGGGAATGCCCCCGGGTAGGATGGGCCCTGGACAGATGGGCGCCCGGCCCTATGGCCCCAACATGGGCCCTAACATGGGCCCCAACATGGGCAACATGCCCCCTCAGGTGGGCTCAGGGATGTGTCCTCCCCCCGCCGGGCTGAACCGGAAGGCCCaggaggcggcggcggcggcgatGCATGCGGCAGCCAATTCGATACAGAACAGGCCGCCTGGCTACCCCAACATGACCCAGGCTGGCATGATGGCTGCCGGCTCCCCCTATGGGCAGAGTATGAACAGCATGCCTGGGATGATGAACCCCCAGGGACCCCCGTACCCCATGGGTGGCAACATGGCCAACAACACTGCTGGGATGGCTCCCAGTCCTGAGTTAATGGGTCTTGATGTGAAATTAAACCCGGCCcagaaaatgaataacaaaGCAGATGGGACTCCCAAACCTGAAACGAAGTCGAAGaaGTCCAGCTCTTCCACGACGACCAACGAGAAGATCACCAAGCTGTACGAGCTGGGCCCTGAGCCCGAGAGGAAGATGTGGGTGGACCGGTACCTGGCCTTCACCGAGGAGAAGGCCATGGGCATGAACAACCTGCCTGCCGTGGGCCGCAAGCCCCTGGACCTCTTCCGGCTTTACGTGTCGGTGAAGGAGATCGGAGGCCTCACACAGGTGAACAAGAATAAGAAGTGGCGCGAGCTGGCGACCAACCTGAACGTGGGCACCTCCAGCAGCGCCGCCAGCTCTCTGAAGAAGCAGTACATCCAGTGCCTGTACGCCTTCGAGTGCAAGATCGAGCGCGGCGAGGACCCGCCCCCAGACATATTCTCTGCTGCCGACGCCAAAAAGAACCAGCCCAAGATCCAGCCTCCTTCCCCAGCCGGATCCGGGTCTCTGCAAGGCCCCCAGACACCCCAGTCGACCAGCAGCTCAATGGCAGAGGGAGGAGACCTGAAGCCCCCGACTCCAGCTTCCACACCACACAGCCAGATGCCCCCCATGCCCGGAGTCAGGAGTAGTGTGGTGAGTCTGCAGGACCCCTTCGCGGACGGAGGTGACCCGGCATTCCCCCGGCGCAATTCCATGACTCCCAACTCGGGATACCAGGCAGGCATGAGCACTCCAGACATGATGGGCCGCATGCCCTACGAACCCAACAAGGACCCCTTTGGCACCATGCGGAAAGCGGGGGAGCAGTTCATGTCTCCGGGACAGGGACCCAACAGTGGCATGGCCGAGCAGTACAGCCGCGCGCCGCCGGGCTCCATGGGCAACATGGCGATGAGCCAGCGGCAGCAGTACCCCTATGGACCGGGCTACGATCGGAGACAGGAGCCGGGGATGGGCCCTGAGGGCACGATGGGGCCCGGAGCGCCGCAGCCAAACCTGATGCCTTCCAACGCCGACACGGGGATGTACTCGCCAAACCGCTACCCTCCACAGCAGCAGCGGCACGATTCCTATGGTAATCAGTACCCTGGCCAAGGTGCGCCCCCCGGCGGCCCCTACCCCAATCAGCAGCCGGGAATGTATGCACAGCAGCAGCCGAACTACAAGCGCCCGGTGGATGGCGGCTACGGACCCCCGGCGAAGCGGCACGAGGGCGACATCTACAATGTCCCGTTCGGCGGGCAGCAGCCACAGACGCAGCCACCCAGCGCCCCGCCGGGCCAGCAGGACATGTACAACCAGTATGCCAACGCCTACCCCGGCTCGGAGCGGCGGCCCCCGGGACCCCAGAACCAGTTCCCCTTCCAGTTTGGCCGGGAGCGGGTCCAGGCCACCACGGGGCCCAACTCCCAGCAGTCCATGCCCGCGCAGATGATGGGCAGCCCCATGCAGTCCACCCCAGACGGGCCCCAAGGCAGCATCTGGCAGAGCCGCAATGAGATGGGCTACAACTTTCCGAACCGGCAAGGCCCCGGGGCCCCCGCCCAGGGCGCAGGCTACCACGGCATCAACCGCTCCGAGGAGATGATGCCCGCTGACCAGAGGATGAACCATGAGGGGCAGTGGCCCGCACACGTCAACCAGCGGCAGCCCCCCTATGGCCCCTCGGGCTCTGTGCCCCCCATGACTCGGCCCCTGCAGCCCAACTACCAGACGCCCCCCGCCATGCAGAACCACATTCCGCAGGTCTCCAGCCCTGCCCCCCTGCCACGGCCCATCGAGAACCGCACGTCCCCCAGCAAGTCGCCCTTCATGCATTCGGGCATCAAGATGCAGAAAGCCGGGCCCCCGGTGCCCGCCTCACACATCGCCCCTGCGCCCGTGCAGCCACCGCTGATCCGGCGAGACATCACCTTCCCACCCGGCTCCGTCGAGGCGTCGCAGCCCATCCTCAAGCCCCGCCGGCGGCTCACCATGAAAGACATTGGCACCCCCGAGGCCTGGCGCGTCATGATGTCTCTGAAGTCTGGCTTGCTGGCGGAGAGCACCTGGGCCCTGGACACCATCAACATCCTACTGTATGACGACAACAGCATCTCTACCTTCAACCTCTGCCAGCTTCCTGGCTTCCTGGAGCTGCTGGTGGAGTACTTCCGACGCTGCCTCATCGAGATCTTCGGGATCCTCAAAGAGTACGAGGTGGGGGACCCAGGCCAGAGGACCCTGCTGGACCCCGAGGGCCTGTCCAGCGACCGAGACTCTGGCTCGGACGAGGAGGAGGACGCGGACGACGTGGAGGACATGGAGGAGGATGACGAGGACGAAGAAGATGACCCACCCGACGTGtctgagcagcagcagcttccGCAGCCCCAGCAGCCGCCGCCCCCGGCGCCGCCGCAGCAGCCCGCCCCAGAGAAGCCACATGGAGAGCCACAGCAGGAGCGGGAAAGagctggggaggaggaggaggaggaagaagaggaggaggagcaggagggggaGTCCGCAGCCAAGGAGCCCCGCCCTGCCACGCCTGCCCTGGACCCCAGCGCCCCCCAGGAGAAGCCCAAGCAGGCCAGCAAGTTCGACAAGCTGCCCATCAAGATGGTGCGCAAGAAGGACCCGTTCGTGGTGGACTGCTCCGACAAGCTGGGCCGGCTGCAGGAGTTCGACAGCGGGCTGCTGCACTGGCGCATCGGTGGCGGCGACACCACGGAGCACATCCAGACCCACTTCGAGAGCCGAGTCGACCTGCTGCAGCCTCGGAAGCGGGCGCCCGCCGCTCCAGGGGGCGCCGGAGGCCGCAAGAGAGCCCCCGTGCCTGAGAGCGCCCCAGAGAGCCGTGCCGGGGATGAGCCGCCACCGGAGAAGAGCATCACGGCCACCATCGACGACGTGCTCTCGGCCCGGCCCGGCTCCATGACGGAGGAGGTGGTGAGGGGCGCGCCCGAGAGCCATAAGGAGAACGGCAAGTTCCTGTTCAGCATCAACCCGGCGCAGAGCCACCGCAACATCAAGATCCTGGAGGATGAGCCGCGCAGCAAGGACGAGACCCCGCTCAGCACCCTGGCCGACTGGCAGGACTCACTGGCCAAGCGCTGCGTCTGCGTGTCCAACATCGTGCGCAGCCTGTCCTTCGTGCCGGGCAACGACCTGGAGATGTCCAAGCACCCgggcctgctgctgctgctgggccgGCTCATCCTGCTGCACCACGAGCACCCGGAGCGCAAGCAGGCGCCGCTGACCTacgagaaggaggaggaggaggacgagggaGTGAGCTGCGAGAAGGACGAGTGGTGGTGGGACTGCCTGGAGATGCTGCGCGAGAACACCCTGGTCACCTTGGCCAACATCTCGGGCCAGCTGGACCTCTCAGTCTACCCTGAGAGCATCTGCCTGCCCCTGCTGGACGGCCTGCTCCACTGGGCGGTCTGCCCCTCGGCCGAAGCCCAGGACCCCTTCCCCACGCTGGGGGTCAATGGGGTGCTGTCCCCCCAGAGACTGGTCCTTGAGACCCTAAGCAAGCTCAGCATCCAGGACAACAACGTCGACCTCATTCTGGCCACGCCGCCCTTCAGCCGGCAGGAGAAGCTCTACGGCACGCTGGTGCGCCTGGTGGGCGAGAGGAAAATCCCGGTGTGTCGGGAGATGGCTGTGGTCCTCCTCGCCAACCTGGCCCAGGGCGACAGCCTGGCCGCCCGGGCGATCGCAGTGCAGAAGGGCAGCATCGGCAACCTGCTGGGCTTCCTGGAGGACAGCCTGGCGGCCACCCAGTACCATCAGAGCCAGCCCTCGGTCCTGCACATGCAGAACGCGCCCTTCGAGCCCACCAGCGTGGACATGATGCGCCGGGCGGCCCGCGCGCTCCACGCCATGGCCAAGGTGGAGGAGAACCACTCGGAATTCACGCTGTATGAGTCGCGGCTACTGGACATCTCGGTGTCCCCCCTCATGAACTCGCTGGTGTCCCACGTGATCTGTGACGTACTGTTTCTGATCGGCCAGTCATGA

Function

GO: NA

KEGG:

id description
K11653 ARID1; AT-rich interactive domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 18303 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 69022 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 143610 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 189456 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 254253 2252119 ~ 2252467 (-) True G102623
TU128289 lncRNA upstream 154772 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 269679 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 434969 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 470856 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 625473 3145264 ~ 3145687 (-) True G102887
AMCG00010842 mRNA downstream 4220 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010843 mRNA downstream 10274 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010841 mRNA downstream 57166 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010839 mRNA downstream 124475 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010840 mRNA downstream 169977 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010845 mRNA upstream 17407 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010852 mRNA upstream 100170 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010850 mRNA upstream 105212 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010849 mRNA upstream 110683 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010848 mRNA upstream 129470 2649261 ~ 2661858 (-) True AMCG00010848
TU127939 other downstream 1471846 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1528593 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2356891 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 220025 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 238687 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 660179 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 801022 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 806067 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile