RNA id: AMCG00010848


Basic Information

Item Value
RNA id AMCG00010848
length 3133
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00010848
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2649261 ~ 2661858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTATAACAACGAATTACATTGCAGCGCAAAACGTCTTCTTGGGGGAGCTGTCGCCTCAGGTATCGCACGGAGCAGCACCGGCCGACTTCCGCAGCCACCGGACGCGAACCGGACTGGGCGGCCCAACCGGACAGCCACCGGCGCAGCGCAGAGCCACCGGCGCCCCCGATTCTCCGCGCCCGAGCGGCAAGGTCAGCGGATCTCAGCGGTCAAAACACGGGGCATTAACGCGGAGAGAGGAAGACTACAACCCGACTTCCGGAGTTTGggatttgaaaaacacaacaacaacaggcgGAACAGAAAGCAGCCCCGTCCTGTGCGGCCTGGGATTCGGTGAGCCATGCCTGGCAACAGTGCAGGGAGCCATCAGAAACCCCACTACCAGGGCCAGCACAAGGGCAGGCATGCGGGCGAGGGCTACAGGCAGGCGGGGGAGGGCACCAGGCAGACGAGACCGGTCTCCAGGGACAGCAGCCTTAGCCAGGAGATTCACAAGGACAGCTCCCCGGATCAGAAGGGCACCAGGAGGTCTGCGCCCCAGCCGGCCAGGAAAGCTCTCGCCCGGGATGCCAACGGGAGGGAATCGGAGACCATCGGCTTCATCCCGGGCTCAGCCGACAACCCTCCTGGCGCCCAGAGCTGCGGCGCCTGCAGCTCAGTGGGCTGGCGCAGCTGCGGCGCCCTGATCTGCTGCATGGTCACCTGCGGCTTCTACAAGGCCGAGACCCCGGTGTGCGTGCCCTGCCTGGCCCACGCCGAGACCTCCACCGAAGACGTGAAGGTGGTGCCGGAGCCGAAGCACTCCAACGGGTTGGCCCTGTCCAATCCCACCTGCGGCGTCCCCCTGGAGAGCCGCCCCCACAAGTCCCCGCTCACAGAGAGCTTCACCTACACCGACATCAAGATCAAGGGCGAGCGGGTGGCCCTCGCCTCAGAGGGGGTGCGCCGGCACGGCCATGCCTACGCGGCCCCCAAGCGCACGCCATCCTCCAAGTCCATCCAGAAGGGGGACGGCCTGCGCCCCATCAGCTACACCAGCTGCTACTCCCTGGAGGACCCCGACCAGTTCCTGGACGACCTGCCTGACAGTGGCACGGACATCGACTCGCTGATCACCAGGAAGCTGCTGGAGCTGTACAAGCTGCACCAGATCGACCAGCTGGCCAAGTGCACCTCAGACTCGGTCTTCTTCCGCAAGACCAGCGAGATCGCCGAGCTCATCAACAACATCGCCCAGGACTACAACCTGGATGAGCAGGACGCCGAGTGCCGGCTGGTGCACGGCGTGATCCGCATCAGCACCCGCAAGAGCAAGAGGCCCAAGCCCGACCCGGCCCATGCCTCAGTCAGCCACAGCCATGACTCTGGCCCCCGGGTGGAGGAGCGCAGCCGGAGGAACGGGACCCTGCCCGACAGCGGCAACGACACCATGATCGAGACCACCCTGACCAGCCAGGACACTGACCTGGACGTCCAGATATCGGAACAGACGCCTTCAGATAAACTTGCGAGACAAATGAGGCACAACAGCACTAAAGTTTACTCCTCGGGCTCATCCGCCGCACACTACACCTGCCCCCCAGACAGCGAGACCCTCTCCTCCGGGACCCCCCTGCTGGAGAAATTCTACCGAACATGAAGCTCGGGAGGAGTTGGCGGGGAGCATCGTGCCACGGCCCCTCTTGCACACTGCCACGGATGccggggggagggagggagggagggaggaaggaagaGACCCATTCCAATAAGCCAAGCTTTCtgcatagaaaaacaaaaacgttattttttccttccattCATTGAGAGGATCTGAAACGCCTTCGTGCTTCTATTACTCTGTAAACGATGCCTGCAGCACTGGGGGCTGCTAATGAGCGCTGGTTCCTGGAGTCTCTGCCGCTCGCCAGCTGGGGGGGCCGAGGGAGACGTGGTGTGTACGCGCCTCCTGCACgcaagaaagaagaaaaataaaggtcTAGGTCTGCAGTAGAGATCCTCTGGGATGGATTTTGACTGGATTCTGGGAAAACGGTTTTAAAAGAGATccctccttcccctcctcctctggctttttattttgtatacgaTTCTGCTCTGTGGACGCGTCTCTAATTCCCTTTGCTCTAACTTGGGCCCAGCTGATGTCCGCCGTGCCGGCTGTGGTGTCGGTGTTTTGTGGACAGTGGGAGGACAGATCTGGACTTCACGGGGAAAGCTCGTCTCGTTTCTGGTTTCGTTTTGTTGCGCCGGCCGACGACGCTGTCTGCCAAAATCGACGGAGTTGTTGACTTGAGCCAGACGCCCGCCAGGGGACAGTAGCGACCTGGAGTGAACACCTCTGGGTCCCTCTGTCgtcttgtgtttttatctgtattaATGCGCTGCTGTACCGGACCCGGGGCAAACCCAACCTCTGCTCCTTTGGGTGTgaggatttgttttctctttccgTCGCAGGCCCCCTTCTTCCGGGGTTGTTTGGACAGATCTTAAAAAAAGGGATGATTCTATCTGGGGAATACTGgtatgcttgtttttgttttgtttagttttattttcatgttttttctttaaataaataaatggaaacggCTGCTTTGCGTTTTTCGCAAGTCGCCCTGCCTTGTGACACCAAATGTGCGCCGTTTAAATGCCACACGAAATCAGATCAAAACGACGAGCGCTGGCGAGTCCCACTCCGAGTCGCACTGCGATCGTGGGTTACTCTGTCATCTGGATGTCTTGCTGAAAGAAAAAGTTATTGACCAGTGAAGTGTCTGAAGCTTCGCCGTGCatgaatttgtttaaatgtttgtcttAGACTGTTAAAGGGCTTTTGGTTAcctacaaaaaaagaaaataagtccTAACATGAGTCGGGACACTTGCTTAATCGGGTGTGTTGCCCTTTTTATTTAGTTCTACTGTGAATAAAGTAAGGGCAGCCAAtcgttttttatttacaatgtataaAAAGTGGGTTttactacaattaaaataatacttttttttcctgtgtgtccCAGAGCAGTGAAATTAGTGTCTGTAGAGGGAAtgcaaatatttgtgtgtgtggagactAAAAAGAGATTGTTtgcagtcttgttttttttttggtggtggc

Function

GO: NA

KEGG:

id description
K23346 KDF1; keratinocyte differentiation factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 160844 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 211563 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 286151 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 331997 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 396794 2252119 ~ 2252467 (-) True G102623
TU128289 lncRNA upstream 12705 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 127612 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 292902 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 328789 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 483406 3145264 ~ 3145687 (-) True G102887
AMCG00010849 mRNA downstream 11206 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010850 mRNA downstream 20744 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010852 mRNA downstream 25933 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010845 mRNA downstream 109823 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010844 mRNA downstream 129470 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010851 mRNA upstream 25208 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010857 mRNA upstream 32547 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010858 mRNA upstream 50669 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010859 mRNA upstream 100668 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010867 mRNA upstream 282337 2944195 ~ 2945511 (-) True AMCG00010867
TU127939 other downstream 1614387 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1671134 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2499432 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 77958 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 96620 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 518112 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 658955 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 664000 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile