RNA id: AMCG00010850


Basic Information

Item Value
RNA id AMCG00010850
length 1883
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00010850
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2625003 ~ 2628517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACGCTGGTGTTGTTTACATCGCGGTGAGCAACATCCCGGCCCAATTCCGCTCCTCGGACCTGCGGAACTATTTCAGCCAGTTCATCGAGGGGGGCGGGTTCGTGTGTTTCCACTACCGACACCGGCCCGAAGTGCTCCGAGCCCCCGGGGACACTGTGCCGCAGAGGGGACAGTCCAGGGAGCCGCCCGGGTGTCCGCAGAGCCATGACGCCGGGGGAGGGAGCTCGGGGACGGAGGGCTCCACCGAGCGAGTCGCCCCTCCGAGCAGCCAAGAGACCCGCTGTTGCGTGGTGGCCGTCCGGGCAGGGGAAGCGGACCGTTTGGTGAAGATGTACGCCGGGAACCAGTGGGTGGACGCGGACGGGAGCTGGCTCGGCAGCCGCTGTGTGATTCGGAAGATCAGCGTGTCGGATCAGTCGgACGTGAACGAGTTTCCCTACAAGACGAAGGCGCAGCAGCGGCGCCGGGTGGCCGCGAGCGAACGCTTCACCGAGGGCGACCTGAAGACGCTGCCCGAGATGAACCCCCCGGCCCTGATGCCCAACGGCAACGTGGGCACCCCGGTCACCGTCTTCCTGCAGCTGATCCAGGCCTGCCGGCTGCCCCCCAGGCTCATCCGCCAACTGGGCCTCAGCTTCCCCAAGACGGGCTCCCGGCGCCGCTACGGCAATGTGCCCTTCGAGTACCGCAACACGTGCACCCTGAGGCCCCAGCAGGAGAGTGTGTACACTGCGGGCGGCGTGGAGCTCTCCGGGGCGGGGGAGGGCAGCCCTGTACGGGGCAGCCAGGAGACCCCAGAGTCTGGCCCGGCTCAGGAAACCCCCGTGAGCGAGAGAGATGGGCCCAACTCCAACTCGGACGATGACGATGACACGTGTGAGGAGTGGGAGCGACACGAGGCCCTGAGCGAGGACGTGACGTGGCAGGACCGCTGCGAGGAGCGGCTGTTCGAGGAGCGGATCGAGCTCAAGTGGGAGAAGGGCGGCTCGGGCCTGGTCTTCTACACCGACGCGCAGTACTGGAAGGAGGAGCAGGGAGATTTCGACGAGCAGACGTCGGACGACTGGGACGTGGATATGAGCGTCTACTACGACAAAGaTGGGGGCGATAAAGACGCGCGTGATTACATCCGCATGCGCCACGAGCAGAGGCTGCGGGCCGGGCTGGAGTCGGGGTCTTTGCTGGGCCCACGCATCGGCGGCTTCGAGAAGTTCACCAAGGGGGTCGGCCGACGGCTGATGGAGCAGCAGGGCTGGAGGGAGGGTCAGGGGCTTGGCCACAGCCGGCCCGGGATAGCGGAGGCCCTGGAGAGCGAGGGCCAGCACCCCAACTGCAAGAGGGGATTCGGgTACCACGGGGAGAAGATCAGCTCGTTCCTCCCGGTGAAGAAGCCTCGTCCCGACTTCCTCATCTCCACGGTGTACGACCAGCCCAGGGAGGAGGACTCCGGGGACTCCCTGTTGAGGAGACAGCAAACCACCAGCATGAAGTACCGGCACTGGCAGCCAGGGGGCAGAAGATAGACACTCAGCAGGATCCTCTGCACGTTGTGCTGGagctgactgtgtgtgtgtgtgactgtgtgtgtgtgtgtgtgggtgtgtgtgactgtgactgtgtgggtgtgtgactgtgtgactgtgtgtgtgtgtgtgtgtgactgtgactgtgtgtgtgtgtgtgtgtgtgtgactgtgtgtctgtgtgtgtgtgtgtgtgactgtgggtgtgtgtgtgactgtgactgtgtgtctgtgtgtgtgactgtgtgtgtgtgtgtgtgtgactgtgactgtgtgtctgtgtctgtgtgggtgtgtgtgtgactgtgtgtgtgtgtgactgtgtgtgtgtgtgactgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 136586 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 187305 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 261893 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 307739 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 372536 2252119 ~ 2252467 (-) True G102623
TU128289 lncRNA upstream 46046 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 160953 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 326243 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 362130 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 516747 3145264 ~ 3145687 (-) True G102887
AMCG00010852 mRNA downstream 1675 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010845 mRNA downstream 85565 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010844 mRNA downstream 105212 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010842 mRNA downstream 122503 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010843 mRNA downstream 128557 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010849 mRNA upstream 1957 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010848 mRNA upstream 20744 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010851 mRNA upstream 58549 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010857 mRNA upstream 65888 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010858 mRNA upstream 84010 2712527 ~ 2723800 (-) True AMCG00010858
TU127939 other downstream 1590129 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1646876 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2475174 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 111299 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 129961 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 551453 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 692296 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 697341 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile