RNA id: TU128320



Basic Information


Item Value
RNA id TU128320
length 635
lncRNA type sense_over
GC content 0.51
exon number 3
gene id AMCG00010856
representative False

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2769140 ~ 2778033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCAGCACTCACTccgtctctcactctgtctgtctctcacactcactcactcacaggaGCCTCAGCAAACATGACCAGACTTCTGCTCTCCGTCTTATTGTGTTCCGTGATCCTGCTGGCTGATGCTCagactcATGTAACGAATGCCACAAATGAGAAGCCCTCCTCGGCGGCCGACGCGCTGGCCGGTCCGCTcgtcctgcagctgctgctgacgctGATTCCCGTCCTGCTGTCCAGGCTCTTCTGACCCGCGGCTGGAGGAGCCCGGGGCCCCAGCGCCAGGGTGGCCCCATTGTGGCACTGAGCGAGCTTGGTGCATGTGGctatagaaaagaaaagaaaagaaaagaaaagatgcGTGTCATTACCCACCATTATACGCGGCTGGCGGTGGACGCACTCAGGCAGTGAAGCCGCTGTCTGTCGGTGCGGCTGCAACGCTGTTCAGATCTCATGAAACCTCAGAAAGACCATGTACGctttttatttgcaatataaTCGATGGGTTTAAATCGTATTGAGTACTTTTAACAATGTCGGTGGAGCCAGATGTTGCTTTTCTTTGCAGATTTAAACACATTAGCAATGATCTGTGATGTcttgttgaaaaaataaacttttcctAGCACGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128319 lncRNA upstream 5991 2769140 ~ 2770473 (+) False AMCG00010856
TU128248 lncRNA upstream 115606 2623606 ~ 2660858 (+) True G102693
TU128193 lncRNA upstream 326583 2449200 ~ 2449881 (+) True G102655
TU128151 lncRNA upstream 458894 2316937 ~ 2317570 (+) True G102628
TU128145 lncRNA upstream 523994 2252103 ~ 2252470 (+) True G102622
TU128456 lncRNA downstream 249149 3027068 ~ 3027397 (+) True G102843
TU128476 lncRNA downstream 316015 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA downstream 322002 3099921 ~ 3103642 (+) True G102860
TU128613 lncRNA downstream 654896 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 657000 3434919 ~ 3457657 (+) True G102945
AMCG00010854 mRNA upstream 14238 2756296 ~ 2762226 (+) True AMCG00010854
AMCG00010855 mRNA upstream 22471 2745754 ~ 2753993 (+) True AMCG00010855
AMCG00010853 mRNA upstream 44370 2731030 ~ 2732094 (+) True AMCG00010853
AMCG00010846 mRNA upstream 132138 2642373 ~ 2644326 (+) True AMCG00010846
AMCG00010847 mRNA upstream 161261 2609273 ~ 2615203 (+) True AMCG00010847
AMCG00010862 mRNA downstream 3655 2781574 ~ 2786898 (+) True AMCG00010862
AMCG00010860 mRNA downstream 10328 2788247 ~ 2795506 (+) True AMCG00010860
AMCG00010861 mRNA downstream 50877 2828796 ~ 2833103 (+) True AMCG00010861
AMCG00010864 mRNA downstream 89289 2867208 ~ 2877101 (+) True AMCG00010864
AMCG00010866 mRNA downstream 115099 2893018 ~ 2895324 (+) True AMCG00010866
TU128314 other upstream 14955 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 703222 2070677 ~ 2073242 (+) False AMCG00010834
TU128591 other downstream 531819 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 553665 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 553800 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 585348 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 593134 3371053 ~ 3398506 (+) False G102921

Expression Profile