RNA id: AMCG00010857


Basic Information

Item Value
RNA id AMCG00010857
length 5307
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00010857
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2694405 ~ 2706621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGAAAATATAATCACAGGCACATTTTGTTCAAACATGCTCACTACTCAAGCGTGTTATATTGGAGTCTGGAGCCTCATATAGTGTGATTGCTGCACTGtgtgtttcatttcagtttctatGCTCTAGTGCTGTCCATATGTTATAACAGACTATATCTGTACACACCCTGGTGCCCAGGGACTGATCGTCACATCTGCCTAATGCGAGCACGGCGGGGCGGGACTGGCCGGATCCCGGAAGCGGAATGACAGGAGTGTCATTAGTTATGGCGGATGTGGTCGAACCGGACACCATGAAGAATTTCCACGGCAGTTTCGAGAGGATAGACCTGGATATGTGCCGCTTCCCCTACTGCATCGTGTGGACCCCCATCCCGGTGCTGTCGTGGCTCCTACCGTTCATTGGGCACATGGGGATCTGCACGTCCAGTGGTGTGATCCGGGACTTTGCTGGGCCCTACTTCGTCTCTGAAGACAACATGGCCTTCGGGAGACCCACAAAGTACTGGAAGTTGGACGTGAACAAAGTGTACGCCAGCGGCTCCAGCGCCTGGGACACGGCGGTGCACGACGCCTCGGAGGAGTACAAGCACAGGATGCATAACCTGTGCTGCGACAACTGCCACTCCCACGTGGCCATGGCCCTGAACCTCATGCGCTACGACAACAGCACCTCCTGGAACATGGTGAAGCTGTGCGTCCTGTCCCTCGTCTACAGCAAGCACGTAAGTTGCGCCGGTTTTCTGAAGACCTGGCTGCCCTTCTTCATGCTGGCCGGGATCGTGCTGACCGTCAGCCTGGCCCTGAACCTGCGGTGACTGACGGAGGCCCAGAGAGCACGGGACGGGACGGGTGGGGCCGCGGGGGCCTCTGTAGGGAACAACATGGAATTGAGAAACAATACTGACAAAATCTTTGGTGTCGTAGAGAAAAAACACTACCCCCTTCAGAAGTGACTCTTTATAACTTTCCGAagtgttgtgtttgtgattttggccttttttttttgttctccgCTTAACTATAGTCTGCCTCTCTAATTAAAATCGAGAGACGCTAGTTGTAAGACGACGGAACCCGATCTGATCGATCCGACTCGACAAGATATGAGATTGCGGATTGGACACGTCTGTGTTTCTACACGCTGTACAAAGGGATCgcttcctttttgtgtttttgttgtcgtttCTTTATGGAAGACGCAAGAACGAAGCGCTGGATGGGATGTGAGGCTGGCGGGATGAGCATATTCCCGCAGTTCTGGTTTTAAGTCCACAGTTTGGGCATcttctttatttcctttcttctgATGGGTGTTGAAATAATCCATATGCCATTTTTGCCTTGAAGTCATTGCTTGTCTTATTCCTTTGTTTCTACCATCCATTTCTCCTTGGGAACAGGcagatgtgtgtttatatatatataaaccaaaatGTTTAGGCCTATGTGTTGTGTTAGATGTAGTCCAGCAAAAGCAGCCAGTTCTGTGTcttcatgtgtgtgttgtttgtatggttcatttgtttttgtttaagtgtAAATTGATTCCAAGCACTCCCTTTAACTCATCTGGTTGTATTTGGACGCTCCCACCGGTCATATTTCTGACCAGATCCAAGCCTCTGAACAAGTGTTCTCAAAGCTGAGCAGCTCTCCTCGGTGTCTGTCGGGCCCGGCTGCTTGTAGAGGCGGCATCAGCGAGGCGACGGCTCTGGCCCACAGCAGGGGACGTGTGCGGCATACGAGTGGAGATCCGGGCTGTTTCAGCGGTGACAGGGCCCTGTGTGTCGTGCCAAGAGCAGAGTAACGCAAGGCAGTGAGGTCTAGACGTGTGCGTCAACACAACATCACGGGAATTATCCAGGTCCTGCCAAGCCGGTTAGACCGTGACCTTGACTCCCCAAGGATGGATCTGAGGTCGGTGGGAAGATGGAAGCTGCACTGTTTTCACAAAACCTTTAAAacgaacaaaataaaaaacgggAACATTATTATCCAAAATATCCACTGCTTGTCTCTCGCAGATTTGAAGGCCCCGTCCTCTGCCAGCAGACCCAGAAGCTGGATGTTTGTCCTCGGCCAAGCTGCATCTCGAGGGCTTCTGCTGGGCTTCTACTTTCACACGGTGGCCGGGGCTCTCGATGATGACAAACCctttaatgataacaataatggTCACACTTTGCACTCCGATGGGATGCTAACAatctttgttttgtgcttttgtctGCTTGTGTGTTCGCTGGCTTCCGTGTCTTtattaaaggaatattttgatCACTCGCTTCACAAAGATGGGGCCTCAGACTGGGCTTTGATCGGGGGTGTAGTTTAGCCTTCTGTCTGGCCGGCATATGACCTTTTGACACAATCGCCGTTGCAGGGACATCTCTCTCACACCCCCGCCTCTGCCTCCGTGACACATTTGACCCCTGTGTTGTTGAGCATCAAACAGAAATCCGCCGGCCTTCCCTCTCCCAGCAGAGACCCCCTGGTCAGCAGGTCGTGTCTTCAGGTCTGGCGCTTCTCCTCGGCCCCCGAAACGGCGACAACAATAGGCTGCATCTGTAAAAAGTGCCAACAGGGAAGTTTGcctttttagttatttttttgtatgtagttttttctcggtttctttttctttttgtgtgttaatgCACCGCCTGGCCGTTTGAATTGATCTGATTGGTGTTTCTAACTCTGCCGCATGCGCTGGTCTCTGTTGTGCATGGTTTTCGGTCAGCGCTGATGGGAAGGGTTCGATTCGGATCTCGGCAGGGGCCTTTATAGCGCCTTCACCGCAGACCCGTGCTGCCCACATACTCTGATATTCTGTCTGAGCTTGACTTTTTAAAAGGACCTGTGTAATCAAGTGATCACTTCtttaagtgaatttatagtTTATATAGTAACAAGAATGTATATAGTAACGGTACTGATTTAGTCACTGGAATATTACAGGgtttcttaacttttttttattcaatgaaGCACCTTTTTAATGTGCACTCCTCTGCCGATTGCAATACTAGCAATATGTCAATCCTGagaatttacaaaacaatcctttttttatttgcaatcgATGCTTCTGTACAAAGCTGCGTCTGGTGCAAAGTGATTCCCTGCCCTCCCGCCCCACCCTACCCACACTTCTAGAGATCTTGCATATTGAGCCAGAGCAGATCGAAAGCATCGCAAGCTGGCTGGTGCACCCCTGTCACGGGCACAGTGGCCTCGTCTCTGCTTCAGTGAGAAAACGACTACACCGGGGAGGACGGGCGAGACGCAGCTTTAATTGTGCTCTCCTGTCCCCCCTGTGTGTCCTCCAGGGAAGCGAGCCAGGACAGTCCCATTGTCTACTGAAGAACACCAATCACAATCTTCCCAATAGGTCTTtcgtaaagtaaagtaaagtcaAATCTTCCGCTTGTTTACAGTCCTGTGAGGCCAGTGAAGCGTTTCCACCTATCAACTGTGCTttctgattgattaattgaagaagaaaaaaatatataaccagGGATCAGACTGATAACCCTACCGCTCTGGAAATGGGAAGAGGACACCCTGAAGCCCATGCaatgacaatatttatttttattggaagTTTGAATGTAATCTGCGACCCGCAGTGACCTCCGAATACAACACTGGgcaggaagtgatgtcattaTTCGAGTGAGCCAAATTAATGAAGGTCTCTCATTGTGCGGGAAGCTgcccattttgtttattttactgtgtgtCTTTTGACAGATGGAAATGGCTTGTTTGATCAGATTGTGTCCTGAATGTCCTCTTGAGTGGTGGTGGACAAAAGCAATATTGCTCTCTGTGGTGCAGTGGGATCAGAGCGTGCAAACAGAGCGCACCCCCAGCTTGTCGCGTTCGATTGTGCAGTCCCAGCGGCTCATGTCACATGTCAATAGGTAATCCTAACGAGCAATAAAGATGGACATCTGACTAAACACGAGTTATACAAGATCATTCACCGCATTCAAACAATGTTTACTCTCTGACTGAGGCGATTGTTGTGAGCCCTACAAAAGAGCCTATTCCAAATGCAAACTTTTGTCCATATTTCACATTCATGACGAGCATAAGAACGGCTGCGGAATACATTCGTGTGTGTACTTAATCTCCTAAGTGGTGGCTCTTTCTGCATTGTGTCTGGTGCTACAGCCGCTCCTCTTACAAAGTGAACAATTATGACCGTTCACTTTAGGGAGAGAAAATATTAGGATTGATTACTGCTACTGGATCAGTGTGTAATCGCATCAGATCCTGTGGCGATCGATCGGCGAGTCTGGCCGGCCAAGGTCGTCTGGGCCAGCTTCTAACGAAGGGGCTGTAATTAGTGGGGGCTGTGTCGGTCCTTTGCCGTTTGCGATCTGGACTTTTAGTGTGAAGAGTAACTGCTGCAAAAGGatgcactttgtttttatacacaaaatgGCTTCAATATAGCATTAAGGGCATTGATTAAGGTCTCTGTAGTTCGCACGTTCTACATCTTCAGTTATAAATTCCTGGCACAATCGTTTCTTGAtgtactaaataataataattaagctggagttgtttttttgaaatattgtaaataaggTTGTTAAATTCCAGACCAATTGAATTCAAGGACACCAAGTTCAGGGGTTATAATGCAGCCTGAGATGGGTGCCGGTTTGTTTTGGTTCgttttggttcattttctacGCGCCCAATATCCAGCTACCTCTTAAATCCTGAGTTCAGTTATCCTAGCTGATGTGAAGAGACACTGTGTAGGGTTACAGGAATGTCTTCAGCTCCAGTTCAAGAACCACACTACCTGCTGGTACCTTTAGTGCCTCCCGGGGTTGGGGGGGCTTGTGAGAGTCGCGCTGATTGTTTTCCGCTCCTACATGACAGAATAGGATCTCCAGTGGTCAAGAAATCTCTTCCTAGCCATTATAGAGACTGTGCTCGGCCTATGAACTCGATCACTTCCTCCCTTCTTCAGTAAAGCAGGACACTACGACACCGCTACCCCGGCATCCTGCCAAGCCTTCCTATAACTATTACTCCagtgctgtgtattttgttttagttcagtGATATACGAGTCTATATACAATACTGCACTTGTCCTTTTTCTTGTCCTGGTTGTATCCACAGTTTTATGCAGTAATtctctattttttattttattttttgcatttgtttttatttaatacctGTAATGTAGTTTAGAGGGTTTGGTATTGGCCTACAATGTGCTGAATATAGAtatgtaaataaagaaatatgtcaatataaatc

Function

GO: NA

KEGG:

id description
K20726 TMEM222; transmembrane protein 222

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128289 lncRNA downstream 19269 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 205988 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 256707 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 331295 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 377141 2316765 ~ 2317264 (-) True G102629
TU128365 lncRNA upstream 82849 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 248139 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 284026 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 438643 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 453216 3159837 ~ 3160036 (-) True G102888
AMCG00010851 mRNA downstream 4995 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010848 mRNA downstream 32547 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010849 mRNA downstream 56350 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010850 mRNA downstream 65888 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010852 mRNA downstream 71077 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010858 mRNA upstream 5906 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010859 mRNA upstream 55905 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010867 mRNA upstream 237574 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010868 mRNA upstream 252654 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010873 mRNA upstream 269835 2976456 ~ 2984072 (-) True AMCG00010873
TU127939 other downstream 1659531 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1716278 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2544576 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 33195 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 51857 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 473349 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 614192 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 619237 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile