RNA id: AMCG00010858


Basic Information

Item Value
RNA id AMCG00010858
length 5677
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00010858
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2712527 ~ 2723800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGTTGCTATTCACCAAAGTTCTTACGCCCGCATTTTGCGTGAGCGCCGTTATTACGAGGCGGGCTACGCTCAAAACATTGCGTAAGAGTTTTAGAGGAGGGATCAGTGCTGGAACGGGAGTTGTGCAGAAAAAGATATTGAAGTGCAAATTCCGAGGATGGACACATAATACGCATTAATTGATATTTGCTGATCTCCACCCTGGACCCTGTTGTTCGGACACATGCATGTTTGCGGCCGGGGCTGAATTAATCAGACTCCGTTTTTGTCGGACTGCTGCGGATCCCAGGCCAGACAGGTACGTGCGCTCTGTGTCTCGGTGTGTTCCCGTCTGTCCAGCCGTATGCGAGAAGAAGACGTGCGACATGTCCCGGGGAGCTGCGTCCTGCCCCTGCCGAGCCGCACAGGTCCACCAGAGACAGCCCGCTGCGGTTTGCATGTGGTCAGCTGTCAAGTCCTGCAAAGCGGCATCGGTGCGGCAGGTGGGACTCGTCCCGGGACGCGGTGTCGCCGCTGGTTCCGTCCCCTCGCCGCGACGCAGCAGTGTGTCAACAAGTTCTGCACCGGGAACAAACAAGTTCTGCTCCTGGAGTTGGCGTGACGTCACGGCTCAGAAgatgacatcatcatcatcatcatcggcTGTCAAACAGGGACGAGATCGGTTTGTGGACAGCTGATCGTGCCTGGACTGCCATTGCCGTTTCCATCCTTGAGTCTCGTCCAGTAATAGTGTCACAAGTTTATATACATCAAGAATAGCCGCTCGACTGATCTGTATTGGGTTCATCTATCGAGTGATGCGTTTATTGACATGCTTTACATTGATGTGCATTCAGCGCGGATGgtggtttgttttccttcattgcatgtgatcggtgtgtgtgtgtttagttttctAGACTTCATCCCATTGTTTTGAATGACGTCAGCAGTGAGATGCCTGTATGTCCCCCCATGGACACATACTTCTGAGTCTGCAGTTTCTGCTCAGACAATAGTTTGGTGCGGCTGCTTTGTGTGGAGACTCAAACTCACAATGTCAAATGTGTGGCTCAATATAATGCGCAGTTAAGCAACGGATATTTGCTCCAGAGTTTCTGAGTTCAGATAATGATACTGCAGGAGCTGGCAGCACGTCTGTGAGTCCGAAAATGATGATCTTCTTGGACATTTACACAGTCTCAGTCGCTGCCTTTGCTGATGTAAAATAGCTGGAGTATCTGTTAGTTAGGGAGAGAACATAGTAACACTGAAGTGGCAGGAGCGTGTGTGTCTGAAACAGCACTTCCTGGATCTTTCTCAGGCCTGAATCATGTGTCCTGGTGTGCATTGATTTGACTCTCACCTCTGGTGGTTTGCACTCTGATTACCGTCTGCAGGTTTAGCAAAGCGCTCCTGAAAACGCTGCCCAGGTCGGGGGCTCAGGGGAAGTAAATCAGTGACGCACGACTCTCTGAAGCCCACGAGTGACTTTGCGCCATGCTTgacgttttgttgttgtgtttgctgGGATCTAAGTGGACGGCAAATTTCAATAAATCGCAAATAACGCCTTCAAGTAaagagttgttttgtttttaatcgcACAGCTGCAGATGACCGGATCATCCTCCCCTGATCGCTCGCACTGCTTTGAtccctgtgttgttgttgtgtgatGTGTGACGTGTTTCTTCTCCGCAGTGAAGACGACACTGTGATGCAGGACTGTGCCGATCGTCTCTCTGTTTCGTTCTGCAGCCAATTAAATGTCTTTGCCGCGGGGAAGCTTTCACGAACAGGAACCAGGCTGGACCCGATGCGCGCTGACTCCTAACCCCGTCTTTACCTTATGATTTGCTGTGAGGCTATGGCGACTGTGAACATCACCAGTGACATCCTGCACAGGCAGATCAGGAGACGCTATCATGTCACAGACCCTTTAATAAAGAGACTGGGGCTGGAGGCAGAGCTACAGGGTCACTCGGGCTGCGTGAACTGCCTGGAATGGAACGAGAAGGGAGAGTTGTTGGCGTCCGGCTCAGACGATCAGCACGCCATCATCTGGGATCCGTTCCACCACAAGAAACTCCTAACTATGCACACGGGCCACTCCGCCAACATCTTTTCAGTCAAGTTCCTGCCTCACTCTAATGATCGTATCCTGGTGACCGGCGCCGCGGACTCCAAAGTGCACGTCCACGACCTGAGCGTCAAGGAGACCATCCACATGTTCTCCGACCACACCAACCGCGTCAAGAGGATCGCCACCGCGCCGATGTGGCCCAACACCTTCTGGAGCGCGGCGGAGGATGGGGTCATCAGgCAGTACGACCTGAGGGAGAGCAGCAAGCGCTCCGAGGTGCTCATCGACCTGACGGAGTACTGCGGACAGCTGGTGGAGGCCAAGTGTCTCGCCATCAACCCCCGAGACAACAACTACCTGGCCGTGGGCGCCAATGGGCCCTTCGTGCGTCTCTACGACATCCGCATGATCCACAATCACAGGTACGCGGCGTCCACCCCACTGACCGCGCGGCCGCAGGTGGCAGGAGCAGTTTCCTGTGCGTCGCTGTTCGCCTCTCACTGCCTCAGATGTTCCCGTTTGTGTTGCAGGAAGTCAATGAGCCAGAGCACGTCGGCGGGGGTGCACACGTTCTGCGAGAGGCAGAAACCCATCCCTGACGGCGCCGGACAGTATTATGTAGCAGGTCATCTTCCAGTTAAACTACCTGATTACAACAACCGGCTGAGAGTCCTGGTGGCGACGTATGTGACCTTCAGCCCCGACGGCACTGAGCTGCTGGTCAACATGGGTGGGGAGCAGGTGTATTTATTCGACTTGACGTTCAAGCAGAGGCCGTACACCTTTCTGTTGCCAAAAAAGTGCCACCCGTCGGGAGAAGTTCAAAATGGAAAAACCTCCACGAACGGCGTCTCGAACGGGATCCACCTGCCCAGCAACTGCTTCCGCCTGCCGGACAGCAAGATCTGTAACAGTGCGTCTGGGgagctgcccccccacctggAGAAGATCAAGCAGCTGGCCAATGACGCGTTCGCCCGGCAGCAGTGGACCCAGGCCATCCAGCTGTACAGCCGCGGCATCCAGGAGGCCGGCAAGAACGCCATGCTGTACGGGAACCGGGCGGCCGCCTACATGAAGCGCAAgtgGGACGGGGACCACTACGACGCCCTGAGGGACTGTCTGAAGGCCATCTCCCTGAACCCCGGGCACCTGAAGGCGCACTTCCGCTTGGCCCGCTGCCTGTTCGAGCTCAAGTATGTGGCCGAGGCGCTGGAGTGCCTGGACGACTTCAGGGGCAAGTTCCCAGAGCAGGCCCACAGCAGCGCCTGCGACGCACTGGACAAGGACATCCGGGCGGCGCTCTTCTCCAAGACCGACGGCACGGAAGACAAGAAGGCGGGCGGGCCAATCCGATTCCGCACGTTCGGGAGGAACAACTCGGTCTCGGAGGACGAGGTGGTGCTGAGGGAGAGGAGCTACGACTACAAGCACCGATACTGCGGCCACTGCAACACCACCACCGACATCAAGGAGGCCAACTTCTTCGGCAGtAAAGGACAGTACATTGTGAGCGGCTCGGACGATGGCTCCTTCTTCATCTGGGAGAAGGAGACGACCAACCTGGTGCGCATCCTGCAGGGGGACGAGTCCATCGTCAACTGCCTGCAGCCCCACCCCAGCTACTGCTTCCTGGCCACCAGCGGCATCGACCCGGTGGTGCGGCTCTGGAATGCCCGACCCGAGAGCGAGGATGTGAACGGCAGAGTGGTGGAGGACATGGAGGGGGCGGCCCAGGCCAACCAGCGCCGCATGAACGCCGACCCGCTGGAGGTGATGCTGCTCAACATGGGCTACCGGATCACGGGGCTGAGCAGCGGGGGGCCCGAGGGCTCGGACGATGAGGACAGCTCTGAGGGCCAGGTCCAGTGCCGGCCCAGCTAGAGAGCCCTGGGGGCGGCCAGCCGGCCCAGACTGTTGGGGGCACCGCAGCCCTGTTCTTCAcctcttctgttttcttttcgtTTCGTTTCTTTCTCCTCCCACAAAACCTGTGACTGGAAGGACTACACTATGCATTCAAATGTAGAAAAGTAAGGGAGTGGAAAAGGGGCCCCCACCACCTTCCCTTCCCTCCGGGGGAATATTCTGAGGACGAGACTGGAGGTGTCGGATGGGTGGCTTTTGCGGAGGATGAGAGTTTggcacttttttcccccctgttttttgttttcctggtcCCGGATTCGGGGGACAGACATAAAAGAATGAAATGAAGACCACCGGCCGCAGTCAAGACCCCCAGTCGCTCCCGAGTCCGAGCCCGGCTGCTCTCCCACTGATTTGTGTCGTTTTAATTTCCCTGTCTGTATGCTTCCACGTATTGTCGGGGGAGGGGAACGAGGACGCTCACCTCCGCTCCGCTTTTGCACATTTATAAAAGGTAGCGCGAACGTCGGCTCTCCGAGGGGGACTGGACCTTGGATGGATTTCGGATCTCTGTCGGGGGAACCGGAATCTCTTTTGTTCGAGTGAAAATAAAGGGCGCCACATTTGTCTGGGCCCGTCGGTACCGCTCGGTGGCGAGAAGATAATGCGACACAGAGGACGGGCCACTATGGCTTTAGTCAGGATAGTGTGGGTGGTTGAGGGgactgtctttttgttttagtgaGGAAACTTCCTTGGCAAACAGTGTTATGTTTGTGCGATATCacgacacacacagactctctagttttattttcagtgctcAGTATCTGGAGGGGAAGGAACAAACACAGATAATGACGTGTGTGTGAAAGCTATTGTTGCTTCCAGTTCCAGGGTTGATCTTTAAAGTGTTGGTTTGTCTTGAGGATCAGCTGTATTTGCATTTAGAAACATTATGGCTGTTGCTGATGGATAtttctccatttatttatttattttttcctctgggTGTGCATTTACCAGCACGAGTCATTGtgcaacttttttttacatctcGACATGGACAGGCATAAGAAATCCACACATTAGCAAGTTTAGACGTTTATGGAGAAAAGCTCCGCCTTTCCACGGAAATGGGTctgatttcgttttttttttctccctccttctccaAAACGATGGCCAGGTCTCCACGCACACACGAGTGATGGATTTCGACATGGATTTTTGCACCCAAACGACCTAGTTTTCCTATAAATCGATCGCATCAGTCGATCGATACTTTGCTGCCCGGCGCTTCGTTTGAATCTAGTGTCCCGTGTTCGCAGGCTTCGGCCGGCTGCGTCATTTCCTCTGTCCCCCGAGTCAGGCGGTCGGGGGCTTTTGTAAACAGTCCCCGTTCTCCGGCCTCTCCCAGCGAAGCAGCGGCGTCTCCGTCTCGAGAGGGAGGTTGCGTTCGTTTGCCCAGTGACAGGAATGTGAACAGGCCAGATTATTCCTGGTTTGCCTCGCTTACCTGACCCCCCCAACACCCCTGACTTCTACtcctctgaaaataaataaatgaataaataaatgagtaaatcACAAGTGAAAGGTCAGAGCCTTTTAACACTagatttctgtttattttttaaggttaccttgttgttttattttgttgttccttttcttttgccAATCTGTGGATTGGGTGCGCTACAGGAGGTATAAGAATAAAGATGGATTATTGCCA

Function

GO: NA

KEGG:

id description
K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128289 lncRNA downstream 37391 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 224110 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 274829 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 349417 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 395263 2316765 ~ 2317264 (-) True G102629
TU128365 lncRNA upstream 65670 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 230960 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 266847 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 421464 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 436037 3159837 ~ 3160036 (-) True G102888
AMCG00010857 mRNA downstream 5906 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010851 mRNA downstream 23117 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010848 mRNA downstream 50669 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010849 mRNA downstream 74472 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010850 mRNA downstream 84010 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010859 mRNA upstream 38726 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010867 mRNA upstream 220395 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010868 mRNA upstream 235475 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010873 mRNA upstream 252656 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010871 mRNA upstream 288793 3012593 ~ 3031562 (-) True AMCG00010871
TU127939 other downstream 1677653 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1734400 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2562698 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 16016 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 34678 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 456170 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 597013 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 602058 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021661 False 3570 mRNA 0.47 16 NC_007127.7 54947768 ~ 54971277 (-)
grasscarp (Ctenopharyngodon idella) CI01000086_02906694_02918246.mRNA True 2684 mRNA 0.50 14 CI01000086 2906213 ~ 2918246 (-)