RNA id: AMCG00010868


Basic Information

Item Value
RNA id AMCG00010868
length 2355
RNA type mRNA
GC content 0.63
exon number 22
gene id AMCG00010868
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2959275 ~ 2971015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCTAGTGTTCGCCTCAGTTATGCGGTCAGGAGAAGCCAAGAAGATGACCGACACCCCTCCCACTGAGACTTCCACCACCGGGGGTGACTTTGACATGATGAGTGCCCTAGACTGGAAGGACGGCATCGCCACCCTGCCGGGGAGCGACATACGGTTCCGTATGAACGAGTTCGGGGCGCTGGAGATCATCACCGACCTGGAGATGGATTCCACCCAAGGCACTGCCAAGGCAATGCAGCCACAGGACCCCTCCCCCGCCGACAGCCCCACCCCGCCGCCAGAGGTCCCCGAGACCACCCCCCAAGCCCAACCCGCAGGGCCTGTGCTGCTCTCCCAGAGCCCGGTTCCCCTGGAAGAGGCCCCCAGCGTGGAGGTGGTCAGCTGTGTCTCCTGTGGAGTCTCTGGGAACCTGGACTGCTTCCTTCAGGGCAAGTTCTGCAGCCCTGCCTGCGCCCAGCCCTCCAGCAGCagGGCCAGTCCGGTGGAGCCGCGAGACAAGGGGGTGGCCGGCGCTAACCCTGGCAGCGAGAGCGACAGGCTGGGGAAACGCGTGCGGAAGAAGAGAAAGCTGTACATGGACTCTGGCGACGAAGAGGAGGACAACCCTGACGACGAAGAGGAGAAGTCCAGGGCTGGAAAAGGGAGGAGGGCTGCTAAACAGGCGAGGCAAGTGATCGCCCCACCGGCCAAGAAGAAGCTGTGGAGCTGGCCTGCCTACCTGGAGGAAGAGAGAGCCACCGCAGCCCCCGTGAAGCTCTTCAAAGAGCACCAGACCTTCCCTCAGAGCCGCAACGTGTTTAAAGTGGGGATGAAGCTGGAGGGCCTGGACCCATGGCACCCCTCCCTGTTCTGTGTGCTGTCTGTGGCTGAGGTGCAGGGTTACAGGATCCGGCTACACTTCGACGGCTACCCGGAGTGCTATGACTTCTGGGTGAACGCCGACTCCTGGGACGTGAAGCCGGCCGGCTGGTGTGAGAAGACGGGACACAAGCTGCTACTTCCCAAGGGGTGCAAGGACGGCGAGTTCAACTGGAGCACCTACGTGAAAAACTGCCGCGGTCAGATCGCTCCCAAACACCTTTTCAAGAGTCTCAACACCTCCGTGACGCCCTCTGGGTTCCGGCCCGGGATGAAGCTCGAGGCAGTGGACCGGAAGAACCCCTCTCTGATCTGCGTGGCCTCCATCGCCGGCGTGGAAGCGGGGTTAACCCTCACAGCGCCGGCCGAGTACAAGCACCCGAAGAGCTTCTCCTGGGAGAAGTACCTAGAGGAGACGGGATCGCAGGCCGCACCGGCCCGAGCCTTCAAACAGagaCCACCCCATGGTTTCCAGGTGAACATGAAGCTGGAGGCGGTGGACAAGAGGAACCCCATGCTCATCAGGGTGGCCACCATCTCTGACACCGAAGAGCACCGCGTCAAGATCCACTTTGACGGCTGGAGTAAGGACTACGACTACTGGGTAGATGCTGACAGCCCAGACCTGCATCCGGTGGGCTGGTGTCACAAGACCGGCCACCCCCTACAGAACCCGCAGGGACTCTCCGATTCCTCCGTGCTCCCGGGACAGGGCTGCCCCACACCGGGGTGTAACGGCGTGGGTCACATCCGAGGGCCGCGATACGGCACACACTACACGGCCGTCAGCTGTCCGTACTCCGAGGTCAACCTGAACAAAGAGGGACTGGTGCCCGACCGGCTGAGCGGGGAGAGACCGGCGGCCGCGGCGGGGCCACACCGGGGCAAGAGGCCAGAGCCGTCCACGCCCACCTCCACCACCCCCGACCTGCCCGAGCTGCAGGACGACTCGCCCCACTCCAGCGCTGGCAGGAAGTCCTGGAGCGGAGAGAGCGAGCGCTCGGGGCGCAGCAGCTCTCAGAGCCTGTCAGAGCCGACGCACTGTGCCGAGGAGAGGACAGGGGGCGCCGCTGAGCCCTGCCCCAATGGAACCAAGGCCAAAAAGTCTGCGCCGATTCCAAAGTGTCTGAAGCTGCACTTagtgaaacaggaagtgggagaTGGAAAAGaagGCCAGGTTAGTCTCCAGCAGGCCCTGCACGAGTCGGTGTTCACGCCCTCCTGCTCCAGCAGCCCCACCCAGAGGATCCAGATGTGCTGGGAGAAGCACTGTAAGCTGCTTCCAGAGGTGCTGGGGCTGACGGCCAAGAGGGTGGCCAAGTGGAGCACGGAGGAGGTCGCCAACTTCGTCAAAGGTCTGCCTGGCTGCAAAGAGCACGCTGCCATCTTCAGGAACGAGGCGGACATCGTCAAGATCCTCAGCATCAAGCTGGGTCCGGCCCTGAAGATCTACAACTCCATCCTGATGTTCAAGAGCAGTGACGAGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128418 lncRNA downstream 4300 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 126092 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 284139 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 470858 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 521577 2386723 ~ 2437698 (-) True G102651
TU128445 lncRNA upstream 19632 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 174249 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 188822 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 189568 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 190082 3161097 ~ 3161512 (-) True G102890
AMCG00010867 mRNA downstream 13764 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010859 mRNA downstream 192006 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010858 mRNA downstream 235475 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010857 mRNA downstream 252654 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010851 mRNA downstream 269865 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010873 mRNA upstream 5441 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010871 mRNA upstream 41578 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010872 mRNA upstream 63332 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010877 mRNA upstream 132959 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010878 mRNA upstream 157237 3128252 ~ 3141209 (-) True AMCG00010878
TU128333 other downstream 181252 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 198011 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 1924401 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1981148 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2809446 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 208955 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 349798 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 354843 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 445353 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1198778 4169793 ~ 4185974 (-) True G103112

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075663 True 998 lncRNA 0.48 3 NW_003336152.2 15195 ~ 16355 (+)
grasscarp (Ctenopharyngodon idella) CI01000135_00935305_00937803.mRNA True 2808 mRNA 0.42 3 CI01000135 934474 ~ 939483 (-)