RNA id: AMCG00010870


Basic Information

Item Value
RNA id AMCG00010870
length 1296
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00010870
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3004761 ~ 3008291 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAAGGAAacccttttgtatttttaaggagGGATTTTTTCATGACACTTGTTGGAGTGATTTTCTTCACGATTGACTTGGTTCTGGATGTGTGGGCGGTGGTGAATTTGTATCATGACGGAGACTACATCTGCATGTGGGTGCTGATCTTCCTGTTGGTGGGATCATCTGTCTTAGTTCAGATATTCAGCTGGCTGTGGTACAGCTATGACCCCCAGCCAACAAACACCAAAGTGGAAACCTTCATTCAACACAAAGGGTTGCTCACAGGGGTGCATGTGTTACAGCTGGGTGTGTTCTTAAGGTATGCGGGGGTCCTAGAAACAGCTGTGCGGCAGTTTCGGAAGAAAGAGAGCCAACTGGAGGGATTGGCTGTGTATCTGACTCATGACCTCAACATGCTGCGGCTGTTTGAGACTTTCTCTGAGAGCACCCCCCAGCTGATCCTCATGTTCTACATCTTCATGCAGGAAAGCGAACTGGAACTCATTACAGGCGAGTACAGCTTCAGCTCTATGCTTGCCAAGATAGCAGGCTCTTGCTTTGCCATCAGCTGCAGTGTTGTGGCATACCACCATGCCATGCGCTCCTTTCTGCCCAAAAAGGCCAAACTGGACTGGCTCTCCTCGGCCATCTACTTCCTGTGGAACCTGCTGCTGATTACCCCACGCTTGACCGCTCTGGCCCTCTTCGCCTCCGTCCAGCCCTTGTTCATCGCTCCACACTTCCTGGTGCTGTGGGTGGCCCTGTTCATCTGCATCTTGCTCCAGAAGACAGATTTCATGGACAATGCCCTGGGAGAATGGCTCTACCGTGGCACAGTGGCAATCATCTGGTACTTCAGCTGGTTCAATGTGGCCGAGGGTCGGACACGGGTCAAGAGCTTCCTCTACCATTTCTTTATACTGCTGGATAGTGCCATCCTGATGAGCGTGTGGTTGAGATGCAGGGACCCAATGCTGACACAATCCTATTCCTTGCCCCTGGTGATAGTGATGCCCATATTATACGTAGCAGGCCTCCTGATGAAAGTCCTCTACTACAGGCATTTCCACCCCAAACATCCTCAGCTATTGTCACCTGCTCCTCAGGATAAAAGCCATCCCATGCAGGAGGACTCCAGCCCAATACAATCCCGCAGCCTCCACTCAGGCAAGATTACACAAACCACAGGAGCTGCAGAAGTCAGGGTCAACAAGAGGATGAGGAAGCTGGCTGCCAACTTCTACTCCTCTCCCATCCAAGCAGGAACAACGAGGGCTGGTCCTCCCTCTGACGAGTCCCAACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128320 lncRNA upstream 226842 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 234288 2769140 ~ 2770473 (+) False AMCG00010856
TU128248 lncRNA upstream 343903 2623606 ~ 2660858 (+) True G102693
TU128193 lncRNA upstream 554880 2449200 ~ 2449881 (+) True G102655
TU128151 lncRNA upstream 687191 2316937 ~ 2317570 (+) True G102628
TU128456 lncRNA downstream 18777 3027068 ~ 3027397 (+) True G102843
TU128476 lncRNA downstream 85643 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA downstream 91630 3099921 ~ 3103642 (+) True G102860
TU128613 lncRNA downstream 424524 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 426628 3434919 ~ 3457657 (+) True G102945
AMCG00010869 mRNA upstream 5658 2990631 ~ 2999103 (+) True AMCG00010869
AMCG00010863 mRNA upstream 15080 2984975 ~ 2989681 (+) True AMCG00010863
AMCG00010865 mRNA upstream 92710 2902803 ~ 2912051 (+) True AMCG00010865
AMCG00010866 mRNA upstream 109437 2893018 ~ 2895324 (+) True AMCG00010866
AMCG00010864 mRNA upstream 127660 2867208 ~ 2877101 (+) True AMCG00010864
AMCG00010876 mRNA downstream 104143 3112434 ~ 3128249 (+) True AMCG00010876
AMCG00010875 mRNA downstream 136823 3145114 ~ 3167623 (+) True AMCG00010875
AMCG00010874 mRNA downstream 164531 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010882 mRNA downstream 171669 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010881 mRNA downstream 174828 3183119 ~ 3188870 (+) True AMCG00010881
TU128314 other upstream 243252 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 931519 2070677 ~ 2073242 (+) False AMCG00010834
TU128591 other downstream 301447 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 323293 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 323428 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 354976 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 362762 3371053 ~ 3398506 (+) False G102921

Expression Profile