RNA id: AMCG00010871


Basic Information

Item Value
RNA id AMCG00010871
length 6094
RNA type mRNA
GC content 0.51
exon number 20
gene id AMCG00010871
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3012593 ~ 3031562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGCGAGCGGCGCGGAGAGACGGGCTGCAGCGGGACCGACCCCCATGGGTTCAATTAGCCTCCAGCGTGTCAGAGCGTAGCCCAGCAGCGTGCCACTCTCAAAGAGGAAACGGGCCCAGTCTTCCCTCGCAGTGATGGACGAGTCACAGGAGCTGACGGAAATGCCTTCAAAGAAAGCCCGCCATGACTTAGACCCAGAAGAAAAGGGGCCAAGGACAAAGGCAATGGGCGACGGGGACACCCAGGCCGGCGCGGGCGAGTCGTCTGTCCACAAGCCGGACTCAGACTCTTACCCCCTGTCTGGCGATTCCCACCTCGATGAGGTGAAACGGGAGACCGAATCCAGTAATGCCACCGGGAGCGACTCGATGAACAGCTTCCCAGACACCGgGAGAAAGTTAATAACCCCAGGTCAGCAATTCAGGTCCTTCACGCACATCCTGCCCGCGTCGGTCGCCCCAGCCGTCACCTCCTACTCCACACCGACGCAGTTTCCTGCCGTCGCTCAGTCCACGATCTACACTGCCTACCCACAAGCGAGCCAAAACTACGGCCTACCTCCCTTCGGTGCCATGTGGCCCGGTATCAAGCCCGAGGGCGCGCTGTCCGAGACGCCGGTGGTGGCACAGCCCGGCTTCCTCAGTTTCAGCACCTCCTATACCTCGACCCAGCCCGGACAGGCACACTATTCCTACCCCAGCCAAGGCAAGCGGTTCCAGCTTCACAACATCAAGTGTTTATACCAATATCCCCCCTGCGACCGCGGCCACAACGGCCACCGCTACTGTGACGCATCAATcgtgtttgtttatattctgCCTGAGTACCCCAGTTACAGCTCCCTGGGGCAGGGCCAGTACCCCCAGTATTACGCAGCCCCCAATTACATGGCCGCTGGCATGCCCAACAGCAGCACGGTGACGGAGGGCCTGGGCACAGCTGGATACCCCAGCGTGAAGCCTGAGGACCCCGTTGATGCCGGACTGCCCAACGCCACAGACTCCTCGGCAGGGGCGGCCAGGGACCAGGAGGAGCCCAGCCGGAGGAACAGCACGGGCAAGGCCAAGGGCAAAGGGAAGAAATCGGACTCCACGCAGACGGCCAACGCTGACCTGGAGCGCGTGTTTCTCTGGGATCTGGATGAGACGATCATCATCTTCCACTCCCTGCTCACGGGCTCCTTCGCACAGAAGTTTGGCAAGGACTCGACAACCGCCCTCAACCTGGGCTTACAGATGGAGGAGCTGATCTTTGAGCTCGCAGACACACATCTGTTCTTCAATGACCTGGAGGAGTGTGATCAGGTTCATGTAGAAGATGTGGCCTCTGACGACAATGGACAAGACCTGAGTAACTACAACTTCACCACTGATGGCTTCAGCGGCTCGAGCGGCGGGGGGGGCCCCGGGTCCACCAGCGGGGTGCAGGGGGGTGTGGAGTGGATGAGGAAACTGGCCTTCCGCTACCGGCGCCTCAAGGAGATCTACAACAGCTACAAGGGCAACATCGGGGGTCTCCTGACGCCGATGAAGAGGGAGCTGCTGACGAGTCTTCAGGCCGAAGTGGAGTCTGTGACCGACTCCTGGTTGGGCACCGCCATGAAATCTCTGCTGATGATTCAGGCCAGAGGGAAGTGCGTCAATGTTCTGGTCACCACCACCCAGCTGGTCCCTGCGCTGGCCAAGGTGCTGCTGTACGGCCTGGGGGACGTGTTCCCCATCGAGAACATCTACAGCGCCACCAAAATAGGCAAGGAGAGCTGCTTCGAGCGCATCGTCTCTCGCTTTGGCAAGAAGGTGACCTACGTGGTGATTGGCGACGGACGCGATGAGGAATTCGCAGCCAAGCAGCACAACATGCCTTTCTGGCGCATCTCGAACCACGGAGACCTGGTTTCCCTGCACCAAGCTCTGGAGCTGGACTTCTTATAGGGAGGCGCGAAGGGCGAGGAGGCCAGGAGGAGCCTGGGCTCTCTGGACAGGGACTACACACTACTCGGCGGAGCTGGGGGACACCGAGGACGGGACCCTCTTGTATTCTCCTCCCCTGATCTCCTGTTGGCAGGCTgaccgccccccaccccccaggccTCAGTGGTCCAGGTGACACGGCCCTGAGGGTATGCCAACCTCTCGCTCTCACTCGCTCACAGCCGGCACCCCAGATGGCGGCTACCAGGACtcgacccccccccccactcctagGCTGGTCCTGACGCAGGGTTGCGCTGCCAGAGCTGGGTAGgagtggtggggtggggggcagatCCTTCAACACAACAAAGGGAAGGTGGTCTCTCCCTCTCGCACGGATCAACATGACGTCTCGGTTCTGCAGGACTCGGCAATGCATCACCCTGGCTGGGGAGTTTTTCAtcatctttttgttgttgtttttggttgttataATTTGTGAATGCAGACTCAGGCTGGTTCTGGTCTAAACACTATATACCCTGATGGTTTCAGTCGCTGACTTCACCGCCGTGTTGGGCAGCAGTTCTTAGACTTCAACACCTCTTTCAATGCAAACCTTCACTGCCGCTCCTCTGGTCTCTGGATTCGTCAGTTGTCACTCGCCTGAAACGGAGCCCATCCAACTGGAGAGCTATCGTTGATGGGTAgagtttaatgaacaattaattaagctaaagattttttatttttttattgcccAGGTCAACTTACCAAAGCGAGGAACACAGTAGAACATAGTGAGATTCGAATTGCTTTGAGAAGCCTTGGAATCGTGCCCTAAAAATCCCCCCCTGGAGACCCGCGTGCCCGAAGTCCCTTCATCCCGAGGGGGGTTGTTTGTCAGAGTCCACGCCTTCAGAGATTAACGGCTAACGGGCTCGTTAAATGACGTGTGTGTGAGAACGTCTCACTAAAGCTCTCCTCATTAGTTCACGTCATGCAGTGTACGAGTCATTCCACAAGCATGCCTCTCCATGCACGctgaattcaaatgaaatcgAGCCGCGGGGCAGTTACAGAGGCCGCTGTGTCTGGAGGTCTCGTTTCGCTTGAGCATCGCAGGTGACGACAGAGAGCTGCGAGATATCGgccaaaactgaaaacaacccAGATGTGCAATATTTCGCAAGTCAATGTATTTCCCCgagtcattttttatttcccccctttgTCTCATTCGTGCAGCTGGTGGGCGCTGGGGAAATATGTCGCTGGCAAAGGGAAGGTCCGTCGTGGTCAGAGTGGAATTACGACTCAGCTAACTGAGCCTGGGCAGATTGCATCTTGAGCAGCAGCTTGACATAAAGAATGTGTatacagcgtgtgtgtgtgtgtgtgtgtgtgtaaatatttatatagtgccttttaaTCCATATATACTGTGTAAGGGATGTACTGAACTGTTAAACTTTGAAATTATTGTGATAGTAGAGTGTAGAGTTGTCATGGTCTATTTGAATTgtatcctgttttttttccctcctctctccGCTGGTGCTCAAACCCGTGTGGTTTTAAAGCTACAGTAACACTTGCTTGTGTTGATGCATGATTTGAAATGAATGTCTGGGCAACTTCCTCATCTTTTGATGCAGATTTCTTCTGTAATGTGGATGTCCTGCTGACTGATTTGTAAGTTATCCCCCAGGAAGATCTAGGGGCAGTCCACCCCAGTCTTGGTACGTCTGTGTTGTGTTAGAACTCGACACCTTCTTGCCGAAGAAAACCGTGCCATTCTCTCAATCAGTATAATGTGTTATATTGGTTCCCAGGTTTGGTAAGTGTTACTGTAACTCTAACACCTGGGAGGCACTGTGAGCCGCCTCCATACTGCACAGACAATCAACACGCAGTGATGTTTACTATTCAGCGTGTTAACAAAACCTCCCGTTGGAAAGGGATCGGTCACAAGGCAATACCGGCTCAGACAGGTACAGGTGCCATCCTGGCAGCTTCCCCTTCTTTGTTTCTGTGGAAGAGTCCCGGGGACGTGTTCACACGCCTCCCTAGACTGACAGACGGGAAGCTGTGGTAGCTGGGGGTGTTGGCAGCACTGAAGGCCAACGCTGGAGCCCAGCCTGGTGAAATGTGGCGTCAGCTGACTGCGTTTCCCTGCAGCAACAGAGGTCACGGATTGGCCCTTTTGCAGTGTTACTGCAGTGCCCAGTaacgcagatctgcgcataagTGGCAGTAGCTACTACCAAATGTTCAGCACATTGTGtcctttaatataaaaacaacaaggagTCTGGAATCCATGTGCAGGAAAGTGTACTGGTCTTCTGGATGCTATTTGCAATTGGCAGAACATCATTCCTACACGGTCTACAGATTCAGGCAGGTTGTGGTTTTTCAGGACTTTAGAACACTGGCTTAAAGCTTCAAatgtttttcgttttttcttctttcccatttttgtgtgttttaagccTATTTATGCTTGAGTCCGGACTCTCGTAACGTCCTAAACTAATAGTACACTATCCAGAAACTTTTCGAACCTGTTGAGTTTGTCGTTTTCTGGAACTTCTCTGCATCCATCTGTCATTTGGGAGTCGGGCGAGTCCTGAGGAGTTGGGGTCTGCTTTCGCGTCTGCCGGCCCTCGAGCGCAGAATGACCCTCTCGAGGCTCGGTCCCGCTCCGCTTTTCTGCCAGGGCCGCGCATCTCTTGGAAATCTCGGACATGGAGGGCGGAGACTAAAGAGGCAAAGCCAGTGTGACGACAAAAAAACGAAGGGagaatgttttctgtttgcGTCTCTCGATACTGCATCTGTTTGTAAGTGCTATTGGGGACATTCTGGAATAATTGGCTAGTATGCTGatatgtttttttgctttttatatatattttgtattcctctAGCTGCGTGTGGTCtgtgtaataaaatgcatgtttattccGACTCTGAATCCTCCTGATGTGGCGTCTCTTCGTAAAAATTGAATCATCCGTTACATATCAATCCGTCGTATGTTTTAAGCTCATGGAAACTGGTTTCATCCCTACCTAGGCACTGATTTGACATCGAGTTGACAAATTGGTGTGTTTTCCACGGGGTTGGGCAGGAGACGGAGATGGTGAGATTCCTGCAGCAGCATGGAGAGTCCGTGTTCTTTGCCTTTTCTGGTCTGACTGTACGCGATGCTACAGTGACATCATGTCCCATCAGatccttcattttgtttttgttttgttaaaaagcCACTAAATGATCCTTTAACATGAATGTTGTGAGTGTGAGCTCGTGTGGCTGATCATATATGACGGCAGGAGGGAGACGAGGTTGGCTGGACAGTGTGAGAAACAGTTTCCTACAGTTCAACATCACCTGAATCCCAcctttttttttagatttgattttcatcattttaggtgtagttttcttttgtgttttgtatttcacttttcGAGTGGAAGTGACCCTGTgccgtttttgttttgtttttatttaatctgtgtgCTTAGCTACAACCTGTCTCGTGGTTTAGAGCAAGGGTCAAAAGTTACTAGAAGCCTCCTGGCTAGCGTTGCAGTGCAGCTTGTCCAGTCCAGTGACTTGCAACCGTGCAAACATTTGGgcattttaaacagaataataagCTACCATAAGCCCTATCAAAACTAATGTGGCAtggttttaaaatcatttttcttcttgaagcgtttattaataatgagaaaaataatatccGCATACAAAACATTTTCGAACAAGAGCCTCACACTTTGATCTTCAGGGCCTGAGGGTTAATGAGTGTTAATTAcaggaatttaaaatgtagaaatgccCCCCAGGGACTGAGTTTGAGAGCCTTTGTTGGTGGTATCATCAATGGGTTTTGTATTCACTGGAGGGTGATCTCTTCTCCAGCACTGTCCATTtctaatgcaaataataatgcGCCCGTTACACAACAATCCCGGAAACCAAAGTAGTAACTGGGTTTGAGAAGTTCTTGGGTCTGGTTTCTTTCTTCCCTTGCGTAAGATGACAGTTTCCTTTTATTGtacatatctatttatttttcaaatgtatgttgtttttttacataaatgttactttgtttttgtaagtttACATTAAAGACCTGGAAGATGTTCTGTTCGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K17621 EYA3; eyes absent homolog 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128445 lncRNA downstream 21345 2990647 ~ 2991248 (-) True G102834
TU128418 lncRNA downstream 57618 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 179410 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 337457 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 524176 2481897 ~ 2488417 (-) True AMCG00010843
TU128510 lncRNA upstream 113702 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 128275 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 129021 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 129535 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 236980 3268542 ~ 3269769 (-) True G102920
AMCG00010873 mRNA downstream 28521 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010868 mRNA downstream 41578 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010867 mRNA downstream 67082 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010859 mRNA downstream 245324 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010858 mRNA downstream 288793 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010872 mRNA upstream 2785 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010877 mRNA upstream 72412 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010878 mRNA upstream 96690 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010880 mRNA upstream 109845 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010879 mRNA upstream 136863 3168425 ~ 3171989 (-) True AMCG00010879
TU128333 other downstream 234570 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 251329 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 1977719 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2034466 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2862764 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 148408 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 289251 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 294296 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 384806 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1138231 4169793 ~ 4185974 (-) True G103112

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064547 False 3512 mRNA 0.46 16 NC_007117.7 55909795 ~ 55997350 (-)