RNA id: AMCG00010872


Basic Information

Item Value
RNA id AMCG00010872
length 4175
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00010872
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3034347 ~ 3044090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACGGCACGGCACTGTACGGCACAGCACGGCACCGCGGGAAGGAGCTGCGTGGAGGCTCTTCTGATCAGACAGCAGTTTTGCACCAGGACGGGTGTGCGGATTTCATTGATACCGTGATCGTGTCGAGACCACTGTGCTTTGGATATATAAGCCCGCTGTGTGATGGCTGTTACCGAAGCCGGCTGCGACCTGACCTACTCCAAAATGAGAGGACTGGTGGCTTTCCTGACGGCCTTCATCAAGGAGAGGAAGATGGGCTTGAACGACTTCATTCAGAAACTGGTGTCCAACCCGCACATCTGTCAGCACTCGGATGTCAGGGTGTTCCTGAAGATGGACGAGAATCAGAACGAGCCATCGGACGAGGATGGCGACTCCAACCCACTGTGCCTGACTTCTCCGAGGAGTTCGCTTGCAGAAGAGATGCAGGTCAAGCCATCTGACTTTGACTACCTGAAGATCATCGGAAAGGGCAGCTTTGGGAAGGTTCTGTTGGCGAGACACAAAGACAGCGCAAAGTACTATGCGGTGAAAGTGCTGCAGAAGAAAATCATCCTCAAGAAGAAGGAGCAAAAGCACATCATGGCTGAACGCAGTGTCCTGCTGAAAAATATCAAACACCCCTTCCTGGTGGGGCTGCACTACTCCTTCCAGACCACCGACAAGCTGTACTTTGTGCTGGACTACGTCAACGGGGGCGAGCTGTTCTACCACCTGCAGCGCGAGAGAGTGTTCCTGGAGCCGCGCGCCCGCTTCTACGCCGCCGAGATCGCCAGCGCCCTGGGGTACCTGCACTCCCTGCACATCGTCTACAGAGACCTGAAGCCAGAGAACATCCTGCTGGACTCAGACGGTCACATTGTGCTGACGGACTTCGGCCTTTGCAAGGAGGGGCTCGACCCCAAGGGCACCACGTCCACCTTCTGTGGGACACCTGAGTATTTGGCTCCTGAAGTCCTGCAGAAACAGGCCTACGACCGGACCGTGGACTGGTGGTGCCTGGGCTCGGTGCTGTACGAGATGCTTTATGGCCTGCCTCCGTTCTACAGTCGCAACACGGCCGAGATGTACAATAACATCCTGCACAAGGGCCTGGTGCTGAAGCCCAACATGGAACTCAAGTCCCACGCCTTCTTCTCCCCCATCAGTTGGGATGACCTCATGGCCAAGAAGATCACCCCTCCCTTCGTCCCCGCGGTGACCGGCCCCACTGACCTCTGCCACTTCGACCCTGAGTTCACCCACCTGCCCGTGCCCGGGTCCCTGGGCAACTCGGACAGCATCCTGGTGACCAGCAGTCTGCGGGAGGCCGCCGGGGCGTTCCCGGGCTTCTCCTACGCCCCGCCTGCCGACGACGCCTTCCTGTAAGGGGCCGAGACGCTCTCCCTCACCCTCCGCGGGAACACAGGTGCAGCGAGGCACACCAACGCGTCTCCGACGACGCGGTGGGGCGTTGAGGTGACCGATGACCAGAGTGGAGTCGCCCGCTGCCGTTAGTGGAAGACATGGAACTGGACTTGACCCATCACGGGTTGGGTGGCCGGGGGTCAGTGGCACCAAAAAGGTGCCAGTCTTTGCGGTGGGCTTCCCTCGGGATTTCCAATCATGGCCGTTTTTTCGTTTTTCATGGCCCACCTGCGCCCCCTGCCCACAGTCCCTCCCCTGGCCAGCTGCTGCAGTTCAGAACTCCCCCGAGATGCACATCGAGACATCGGCTACACGGAGTGCCGTGTCTGACGcggtgtctgcgtgtgtgtgagggagagggcAGAGGGGCTGGTAAAGCTCGCTGCTCGAGACACCGAATTGACTTCTGCTGAACGCATATCTGCAACGGCAGCTTCAGATCAGATGCCTTTTCTGCCCCTCCGAGTTCGTGCTTCTATTCAGCATGAATGGTAAATTTTATAATTACGATAATAAAtggtatgttatttttttaaatgcaaacgCTCTATTGCACTCTGAATGTGTGGCTATGAAGCTTCTAAAGTTGTATGGAGTTTATATGTGAGTTTGTAGGAGAGAAAGTAGTCGATGTTAAAGGAGAGGAATGCTTGACAAGTGTCTGTCATGTACAGGGATCCAAAAACGCACAGGGAggcagtattttgtttttattaagacaTGGGCACCTGTTCTCTATGTGGGAAGCGGTAGTTTCTGAACACAAAGTTCTCTGCTTCTTTCTAATAGGTTATGGGACTAATATCACTAACTCCCCATAGAGAGCAGAGTTTAATAAACATTCACGATTGCACAGGAACCTACCACGGCTGGCTGTCTCAGGTTGGACGGATATCTGTCCCACAACCGAGCACCTCCTCACAGGGCTCTGTAGACAAAACCAAATGGGGAGCGGTACTGCGGTCGACTGATCAAAAGTCAGGAGGGTTTCCCAATTTCAGATCTCTCTGGAGGTGGGCTCACCGGACACCAATAGTCCTCGCTGCAGTCTTCTCTGCTGATATTACATGGGATAAGTGGGGGATTATTAAATCTTTTAGCTACAGTGgagatttgttttgtctccaatGGGTGAAAAAGGAGTTGTGACCCAGCTTAAAAGATACAAAGTCTTTTTAAGAATTGGATTCCAGGCACCTGCGTTGGGGGTCTGGTGCCATTGTGAAAGACAGACATGGTCGGTGTATTGTAAGCAGTGACTCTGTAGATCCAAGGTCCCGGGGACGGTTACTGTTCTTATGTATTGACCTCTGTCTTCAATGCATCGCAATATTGTCCTCCTACACTTGGATCAGTGTGATCACTCCGCTGTCTTCCATCTGTACACGTATATTATGAGGGTATCGCACGGGATCGATAgttcacagcactgcagtggtgggtgggggggtctgcGGGAGTCGAACAGGTCCGTTCAGAGCTTGGGGAAAGGCAGTCTTTGAACCGTCGCCCTCCCCCGCCTGTGAACGACACTCTGGATGTTTGCTGATCGTCTTCATTTATCTGTCTTTCACTTCCACCAGCACTGATCCTGCCTGACTGCAGTCACTGTACACTGCCAGACACTGAATAACAAAGACACAACTGTTgcctgtttatatatatatttatttttgtatgactAACTTCATAGAGCTAGAGGATTTTTGAGATGAGGTTCTGAGCTTTTGCAAGGAGGACTCCTCTGCTATTttgtttggggtggggggggagaggacCCTGTGTGTTGTGTACTTCTGCAGAATATCACTTGACCagcataataatgataatgatcgggggggggggttgttttccGCCTGACCAATCGTAAGGAGACTCGGCTAGATTGTATTTATACGATATGCATCATGTAAATAGTAGCTCATTTCAAGTTAAAGGAGGGGGAGGTCTTTTGTGAAGGATGCATGTCCCATCATGTCGAGCAAAAAAAGGCCTTGCCCTGTGGATCAACCCTCtcttcatgtatgtattttttctgtggtCTGTCCTGCCAGAAGgtttaatttcccttttcttgCTCTCAACAAGCCCTGCCCAAAACTGCATcactttaaaatctgttttattatgcAATAACTCCTCCAACTATTATGCCTCCAACAAATAGAAACCCTGAAGGATATACGGACACATCGTTTGAGCAAGAGAGCAGGAAAGTGTGAAACCGACTGGTGCCGGGCTGGCCCAGAAGGATGGCTATCTACTTCAGTTATTGAAGCATGCTCACTGTACACGGTGGACAAAAATCTACTTTGAATTAGTTGGTTCTTCTTTTCTTTGCACAAAGGAAGCTAAATGTGGCCGTGCTTTCTCCCCTCTTCGGGTGCATGCCTCCAGTAGGTAGAGGTTCTCGCTGTGGTTTAGCCCAGAGACGTCACCGTGTGGGGTCTCTATTTAGGCTTCCCAGGAGGGCACCTACGGCCCTCGTGTTGCGACTCCACTGTCAAGCCTCCACTCCACTCTAGAGATTTACGCCAGCACATACAGTCTGAGTGTCGCAATTTCTTCCATATGTGGAAGACATTATGAttctaatgttattttttcggttcacatgtatttatttacacgtTGTCAACAtatgtactgtactttaaagCTGGGCGAGCTGCTGCTTAGTCTAAGCGGAGGAATGAGATTAATAAAATTCCTAGGCTGATTTGTGGGCTGATGTGTCTTGTGTCCCGTCTGAGCTGTTGAATGG

Function

GO: NA

KEGG:

id description
K13302 SGK1; serum/glucocorticoid-regulated kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128445 lncRNA downstream 43099 2990647 ~ 2991248 (-) True G102834
TU128418 lncRNA downstream 79372 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 201164 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 359211 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 545930 2481897 ~ 2488417 (-) True AMCG00010843
TU128510 lncRNA upstream 101174 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 115747 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 116493 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 117007 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 224452 3268542 ~ 3269769 (-) True G102920
AMCG00010871 mRNA downstream 2785 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010873 mRNA downstream 50275 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010868 mRNA downstream 63332 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010867 mRNA downstream 88836 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010859 mRNA downstream 267078 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010877 mRNA upstream 59884 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010878 mRNA upstream 84162 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010880 mRNA upstream 97317 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010879 mRNA upstream 124335 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010883 mRNA upstream 146731 3190821 ~ 3209564 (-) True AMCG00010883
TU128333 other downstream 256324 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 273083 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 1999473 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2056220 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2884518 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 135880 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 276723 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 281768 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 372278 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1125703 4169793 ~ 4185974 (-) True G103112

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000665 True 4857 mRNA 0.37 8 NC_007112.7 33217911 ~ 33283689 (+)
rainbow trout (Oncorhynchus mykiss) TU246186 True 260 lncRNA 0.43 2 NC_048567.1 2247779 ~ 2249345 (-)
rainbow trout (Oncorhynchus mykiss) TU999008 True 348 lncRNA 0.51 3 NC_048574.1 31142604 ~ 31147412 (-)
mexican tetra (Astyanax mexicanus) TU246186 True 1776 lncRNA 0.47 12 NC_035917.1 211835 ~ 231061 (+)