RNA id: AMCG00010875


Basic Information

Item Value
RNA id AMCG00010875
length 6925
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00010875
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3145114 ~ 3167623 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACTACCAAATCAGTGCGGAACCAAAACGTCCCAGCCGCCGCACCGACGCCCTGCGTGCCCTGCGCCTCCACGCCGCGGCTCCGCAGCCGCTCACTTCCTGAAGCCGTCTGGCGGGTCACATGACGTGAGTGCGTACGCGCCGTGGCCGAGAGGGAAGATGGCGGACGGGGAGGGAGAAACGAAGCCTGAGTGGCGAGATCAGCCGCAAAACACCGCGGAGAAACCTCTAATCGCAATGGACAGTTTACTGGACACCTTCGGCGGGCTGGAGGCCGATCTCCGGCGGCAGGAGGTCTCGGTAGCCGCGTCCGAGGACTACTGCATGCGCTTCTGCCAGGCGCTGATACAGTACGCCGGCAGCAGGAACTCCATGCAGCACGCCCTGCCCTTGCTGGAGGTGTACCGGCTGTCTATCCAGAGTTTTGCCGCAGCCAGGTCTCACCTTAGCCCCGAGTCGGACAGCGTGGGCCTGGTGCTGAAGAGACTAGCACTGAGCTGTTTTGAGCTGCTGCTGTCAGTGCCCGATACTGAAATCTCGTATGATGCCTGGATGCAGTTTCACCACTCTGTGCAGGAGATTGAGTCCACAGCACCATTGTGTAAATTCATCACTCTGGAAGGACCTCAGTTCCTGGAGATGCGGTTAAAGCATTTGCTGAAAGTGGGGGACTCCACCAAGGCCATGCTTCTGGCCAAGTGTTGCACCGAAAGCGATGACATCGTCAACAAGACCGCCTTTCGCCAGACCTACATCTCGCAGCTTTGCAACCTGCTGCCCGACGAGGAGGCCATGAAAGAGATCTCCAGCGTGGAGGGCAAGGAGGTCTTGGATATCATCTGTAACCTGGAGGCAGAAGGACAGGAGAACACTGCCTTCATCCTCTGCACGACCTATCTCactcagcagctgcagcaggagaGCACGTACTGCTCGTGGGAGCTGACCCTCTTTTGGAGTAAGCTGCAGAGAAGGATCGACCCCTCCCTGGAGTCGTTTCTAGAACGGTGCCGGCAGTTCGGTGTCATTGCCAAGACTGTGTACCATCTGATTTTCTTGGTCAGAGTCATCCAGACAGAGGCAGAACAGCAAGGTCTAGCGGTGTCCATCGAGCTGTGTGTCCGAGCTCTGCAGATCCCACAGCCGGTTGACCCACAGACCAAGACGTCCGTCTGCAAAACGGTGGCATGCCTTCTGCCCGATGACCTGGAGGTGCTCAGGGGCTGCCAGCTCACAGAGTTCCTCCTCAGCCACTCCCAGCAGGCCTATGCTTCTCTGGAAGAGCTCTACCAAAAGCCAGACCAAAAGTACGACGAGGAAAATGGCATCGTCCCCAACTCCTTGCGCTGCGAACTCCTGCTGGCACTCAAAGCTCACTGGCCCTTCGATCCCGAGTTCTGGGACTGGAAGACCCTCAAGCGGCACTGTCTGCAGCTGCTCGGAGTGGAACTGCCAGCTGGGTCgcaggaggaagaagaagaagaggaggaggagcaggaagaGAAAGCCTTTGCCAGGCCAGATGCAGGAGAGCTGTCGAGGGACTGCAGCAGGGATCGGTCAGACCAGAGTCAGTGCAAGGAGACTGAAGATGAGGACTGGGAGGACAAAAGTCAGGTCGGGCAGGccctgaagaagaagaaggaggtggGCACTTCGGAGCGCTACCAGAGGTGGCTCAAGTACAAGTTCTTCTGCCAGATCTGCAAGAGGGAAGTGATCGAGGCGCGGATCCTGCATCACTCCAAGATCCACCTGGAGGATGGCGTCTTCACTTGCCCCGTGTGCCTCCAGAAGTTCGTGGGCAAGCAGGAGTTCATGCCACACATCAGTAACCACGTCCGCATGCCGGCCAGGAGCAAGAATccccagaaaaagaaaaaggtaaaaaagAAGAAGGTGTTAAAGATGGAGGATGACATGGACGAGGACGAGTTGGACGACGTGGAGCCGGGGGAGATCAAGCTGGACCCGTCCCTGATGATGTATTTGCAGTCCACCGCGGACCCCGAAGTCCTGGATGATTTACTGCAGCAGGCGACGCCCAGCAAGCCGGCGGACGATGACTACATCACGTTCAGTTACATCGACGCCCACTTCGAGCTGCAGGACCGAGACGTGTACCCGTGTCCTGCCACAGACTGCACCCGCAACTTCAAGCATTTCAAGTACTTAAGCGTGCACTTAAAAGCAGAGCATCCAAAGCCCGACGACAACATAAAGCACTATTTGGAGATGAAGGATCGCCGGGAGAAATGCACCTTCTGCCGCCGCCACTTCTTTACTGCCTATCACCACCGGAAGCACCGGCCCGTTCACTACGGAGAACAACCGTACATGTGCGTGGCTATCGGCTGCGGGGCTCGGTTCAACACCACCAATGAGCTCGTCTCCCATAAGCAAGGGCACGGCTACCGGCTCAGTTACCACTGTGAGCTGAAGGGCTGCAGCCTCACCTTCAGTGACTTGGGGCAGCTCTACCACCACGAGGCCCAGCATTTCAGGGATGCGGCCTATAGCTGTCCCCACCCTGGCTGCAAGAAGTTTTACTATTCCAAAAAGGAGTTTATCAAGCATCTGGCCGTCCATGGCTTAACCTTCTCAGAGGAGGATTTTGTTGCTCAGAGAATCATGAAACGAAAACCAGTGGATCCTTTTGCAGACTCGCACTCTGGCGCTGCCATGGAAGGAACTACAGTCTCTGAGGCCGGTTCAGGTGACGTGCTTGACGGCGTAAAAAGAGAGGTGACGGAGGAGGGACGGGCATCTACGCCGTGTGCTTCCTCTTCCCAGCCTTCAACCAGCAAGGAGCTCACGGGCACGGTGAccagtgtggctgtgtgtttcGATGGCAGAAGGTTCACCTGTGGTTTTGAGGGCTGTGGACGGACGTTTTCCACAGCCAGGGATATCCAGAACCACCTGAAGAACATGCACCCATCACAATTTAAGCACCAGAAAAAGGGACAAGGTGTGAAGAAAGCAGCGAGCAAGGAAAAGGGCTCAAGGACTAAGAACAACAAAGAGCGGAGCAGCCAGGTGCCGAGTGCACAAGGCCATTCCAGCTCTTTGCCTCCTGAGGCGCCCGACCAAAGTATTTCCCCTCCTCCTGCAGCCGACCCAGAACCTGTAGCGGAGTCGCCAAGCCCCGGCGTTGAGGACCCCCTCGGGGACATCCTGCTGGGCTTAAGTCAGCTGAATCTGCAGGGCTCCACCTCAGCCCCTGTCTCTGGTCCATGTCATCCTATCTCAGGGTCCTCCATTTCACAGGTGTCTTCACCCTCCACCACTTGTGCTAACTCCCCTGCCAAAGCAGCAGGGAAGAAGGCGGCTTCCAAGTCCCAGCCGGAAGCATGCGGTACCCAAAAGCGTCCGCCTCCAACGCCGAAGGTAAAAAACGAAACGCCCAGAAGCCCTTCTCCAGCTCCACAGCCACCCCCAGAAAAAGACGAACTCGTAAACCAGTTCCTGGTGCAGCCCTCTACAAAGCCTTACGTCTGCGAAGTCAAAGGCTGCCCCTTTAGAAGTGTCACCAGCTCCGCCCTCATGGTACACTATCTGAAGAAGCACAATTTCTCCAAGGAGAGGGTGAAGGGAATGGAAATCTTCAAATCGAGCAAGTTCAAGCCATTCAAGTGCCACCTTTGCCCCAGGGGATTTAGTAAGAAGTCCGAACTAAGGGTCCATTTCATTAGCAAGCACAACCTCAGCAAAGTGTTGGTGGAGCAAATGAGCTGCTCCCTGAAAAGGAGAGACAAGAGCATCAAGGGTGTCCCGCCAAAAGCCTCTCATCCACCAGACACTGGGGTTAGCCTTAAGGCTGCAGCTAGACCAGAAAAAAAGCAGCCTGTAAAGCTGCAGCAAAGCAAACAGGCCCCGGGTTGGCAGCAGAAGTACCGTAAGAAAAAGGGTGTCATGTGGAGGACTAACAGGAAGTGGGAAAATGGAATCAAGTTGGAAGACAAGGACAAGACTAGGGACATGAAAACCCCGCCCCCCCTGGCTTTGCAGGACAACGGTGatgaggaggaaggggaggagggAGTAGCCCGTGAAGGCAGGGGCAGCCGACGCTTAGTGGCAAAAGGCAATCTCTGTTACATCCTGACCAAATACCACAAGCCTTTCCACTGCGTGCACAAGGGCTGTAGCTCGGCCTTCACCAACCAGAATGGACTGATTCGACACCTCCAGTCAGTGCATCGATACAACCGCTCTCAGTTGTGCCTGGAGGGAGACCTGCAGCAGGGGGGAGCTGCCAAGAAAGACCTGGTGAGACCCAGACGGCTGCTTTGCAAGCACAAGGGCTGTGGGAAGCATTTCCACAGCTCGTCTGGGCTGTCTAGGCACTGCCGGGAGTCCCACCCTGCGAAACAAGACTGTGCAGAAACACAAGAGTCGACAACCCCTGTTTTAGAGGACCCCATACCTCGCTTCAACTGCACCTATAAAGACTGCACAGCCAGCTACCACCTCTACAGCAGCTTGCTCCGCCACATACGCAGCGTCCACCGAGGCCAGGGCTCGGTACGCTGTACCTTCGAGGGCTGCACTCGCGTGTTTACCCAACACTCCAGCTACAAGCAGCACGTCTTCTACAGTCACTGGGACTACTACGACTCCTTCGTTCTCAGGCTTCAAAATGACAACGAGAAGGACAAGCCACCCACCGGCTGCCAGAAAAAGCTCATTATAACCACCAGCCAGCCGTTGTCACAGAAAGGCAGCCCTGCATCCAAGCTACCTCTTCGACAATCTTTGAGAAATACCTCGAGGTCTCAAGACACCCCAAAGAAGGAAGAGAGTGCGAAACAGCAGCCCTCCAATGGAAATCAGACTAAACTGGTCTTCCGAACCCCTGAAGAGGCCCTGCAGATGTGCCAAGATAAGAGCTTTGCGGTTGCGTACCCTTGCATGCTGCAGGATTGCGATTCAGTGGTCACCTTGTCGAAGAGCCTGCGACGACACTATGTACGGTGCCACAGGCTGTCGGAGACTTATGTCAAAGTCAATGTGGAGAAGCTGGTAAACAATGCGGAGAAGCTGGAGGAGTTGATTCAGAAGAAATCGGCACTTGCAGCCCATTCTGAGGTGGACAGGACCCCTAATGGCGTCCTGAAGGTGGAGTACCAAGCGGAGCCAGAGAACCACGTGGGCCCTGAACTGCCTATGAGTTTGCACTCCATCAAAACAGACCCTCTGGGTGGACAGGATCCCTTGGGTTTTAATGAAGAGGGCTCTGAAAATAACCTGCTGGTGGACGCGGATGATTTGCTCTACGGGGAGGCTCTGAAGAATGGCCACAGTGGCCGCAGGGAGCAGACCCCAAGGAAAAGCCACAGCTGCGAGGAGAAGGCCAAGTTGCACTCGCCTCCATCTACTCCATCCTCTCTACGCTTCACATTAGATGAGGGATTCCTGGATTGTTCTAGTAAAGGTGGTGGGAAGGGCACGGGCACTGTAACCAATCCCTGCCGGCAGCCCCTGAAGCGCAAGAACGAGCTGGCCGAGCCGCCCTTCACCCCCCCCAAAGACAATCAGCAGAGCCGACTTCCTCACAGCCCCACCTCCCGGACTTTTGACTTGGCGGGTTACAAACCCATGGGCTTCGAGTCGTCCTTCCTCAAGTTCATACAGGAGAGTGAGGACAAGGAGGACGAGTTTGAGGAGAGCGGCTCGTGGGAGTCGCGGCTGCCCGACGCCCAGATCGTGCCGCGGCGCCGGGACTCCCACCGCCGGAGTTGCTCCGTCAAGGAGAACAGCCAGAGCGGGCTGGCGCTCACACGCAGTCGCAACGGCTCGCTCGTCCACGGCAAGCTTTCGGCCTTCAAGCCCCGGCTGTCTCCGGGGGAGTCGGCCACGGTGAAGAACTTGACGTCCATCCTGGACAAAGCGCTGACAGACTGTGGGGACCTTGCCATAAAGCAGTTGCATTACCTCAAGCCAGTGGTAGTGCTGGAAAGGTCCAAGTTCTCAACGTCTTTGTTAGATCTCTTCCCAGCTAAAAAGACTGATAAGCTTCGCCTTGTGAGTCCTTAAACTCTGGACGCTGACGGACAATGTTGCTCAGCGAACGTAAAGactgtttcagtatttttttttttcttttctttttttaactattaaaaAGAAGTTGCCAAACTGTAAAAGCTCAAGTACCTTAACTGATTATAGCAGATAATGAATtgtatctgtatatgtatatgtatacacatacaaGTGTAGGACAGTGGTTTCTTAGATTTGTTAACAGGATGTTCATCtgcaaaaacttttttttttttttttttcaaaattaattctaATAAACGATTCCGTTCAATGGTGCTAAATTAATATACTCCTTTGAAGTTTGAAACTTCCTTGATACATCTTTGCATGGTTGTATACAtgatctgtttttcattaaagggAGGTGGGAGGAAAGTTTTATATGATCAGTTGAGTAATAGACTTGAATGTGCACTTCAAAAGTGGTCCTTGTAATATAATGTACACTACATTCATTTTTctatgttctttattttgtattttgtttaattgagttAAATACCAAATGaactaccccccccccactccacacacacacagacagtatgTGGACATCAGTCACTGCTACTGTTTATCAACCAGTCACAAATGGAGATCTGCTGGGGAGTGCTGAGGTGTTAAGAATATAGCAGTAATTTTGAGAAGTCATGAACAGGAAATTCAAAGTCTGGAAGTGTTTGGGGAAGAGCCTgccatttcaatgttttcagttactttgtttttaaagtgcgTTCCTGAAGAGCTGGTTAATAGTAACAAGTTCCGCTGCGTTTCCTTCAATTCTCGGATGCCCGTGTACCCATAGGTGTGGAAACCAGACATTCAGAtctgttttatacatatttcagaCAGCAGAACAGTTATCCTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 14850 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 41472 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 117717 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 367195 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 374641 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 265192 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 267296 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 292239 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 425045 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 882315 4049938 ~ 4083586 (+) False G103078
AMCG00010876 mRNA upstream 16865 3112434 ~ 3128249 (+) True AMCG00010876
AMCG00010870 mRNA upstream 136823 3004761 ~ 3008291 (+) True AMCG00010870
AMCG00010869 mRNA upstream 146011 2990631 ~ 2999103 (+) True AMCG00010869
AMCG00010863 mRNA upstream 155433 2984975 ~ 2989681 (+) True AMCG00010863
AMCG00010865 mRNA upstream 233063 2902803 ~ 2912051 (+) True AMCG00010865
AMCG00010874 mRNA downstream 5199 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010882 mRNA downstream 12337 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010881 mRNA downstream 15496 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010885 mRNA downstream 110204 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010884 mRNA downstream 134333 3301956 ~ 3310951 (+) True AMCG00010884
TU128314 other upstream 383605 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 1071872 2070677 ~ 2073242 (+) False AMCG00010834
TU128591 other downstream 142115 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 163961 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 164096 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 195644 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 203430 3371053 ~ 3398506 (+) False G102921

Expression Profile