RNA id: AMCG00010879


Basic Information

Item Value
RNA id AMCG00010879
length 826
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00010879
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3168425 ~ 3171989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCCCTCCCTCGGCGCTGCGTGGACAATGCCCCCCACGCGTCGCCAGGCAACAGGGGACAGTTTGTAACCAAACTGATCCGCAACATGGACGAGTATCAATCCGCAGAGGAGACTGCCTTCGTCGTGGATGACGTCAGCACCATTATTAAAGATGCAGTCGAGGGCACCATAGGGGCCAGTGCATACCAGCACAACCGGGTCAACCAGTGGACGTCCAGCGTCGTGGAGAGCAGCCTCAACCAGCTCACCAAACTCGGCAAACCTTTCAAATACATCGTGACCTGCGTGATTTTGCAGAAGAACGGGGCTGGACTCCACACGGCCAGCTCTTGCTTCTGGGACAACACCGTGGACGGAAGCTGCACAGTGAGATGGGAGAACAAGACAACCTACTGCATCGTCAGTGTCTTTGGACTGGCAATTTAGGGGCAGCTTCCAATGGTGGTGCAGATATTCAGTGAGGAATATTTGTACTACATTTGATTAAGAGTTTTATAGAGGGGACCCACCTAAACTCTCCTATTTGATCACGTCAATCCAGTGATTCTTTAGCTGCACTCTTCAAAACAGCTCAGCACGTGCACAGTCCACATTTCTCAGATGCCACTACttgattttattgtttcattttaacgGGGAAGGATGGCAAATGTAACCTtcaataaaaaactaatttgcaattagttataataaatgtaattgttgaaTTTGGAACTGcactgcatttctttatttctacatttaatacaaaaatgtgatcCATGTTAAACTCCAGAGGTCTAATAAAGTAAACGAAcggttaaaataaaaagtcctgAAC

Function

GO: NA

KEGG:

id description
K10420 DYNLT; dynein light chain Tctex-type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128513 lncRNA downstream 6913 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 7528 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 8389 3159837 ~ 3160036 (-) True G102888
TU128510 lncRNA downstream 22738 3145264 ~ 3145687 (-) True G102887
TU128445 lncRNA downstream 177177 2990647 ~ 2991248 (-) True G102834
TU128569 lncRNA upstream 96553 3268542 ~ 3269769 (-) True G102920
TU128685 lncRNA upstream 248899 3420888 ~ 3424769 (-) True G103006
TU128714 lncRNA upstream 382194 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 612268 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 966631 4138620 ~ 4139637 (-) True G103087
AMCG00010880 mRNA downstream 24666 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010878 mRNA downstream 27216 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010877 mRNA downstream 61221 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010872 mRNA downstream 124335 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010871 mRNA downstream 136863 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010883 mRNA upstream 18832 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010891 mRNA upstream 86954 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010895 mRNA upstream 149387 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010896 mRNA upstream 245160 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010893 mRNA upstream 270452 3442441 ~ 3450634 (-) True AMCG00010893
TU128333 other downstream 390402 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 407161 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2133551 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2190298 975553 ~ 978127 (-) True G102434
TU127810 other downstream 3018596 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 7981 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 148824 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 153869 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 244379 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 997804 4169793 ~ 4185974 (-) True G103112

Expression Profile