RNA id: AMCG00010880


Basic Information

Item Value
RNA id AMCG00010880
length 1152
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00010880
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3141407 ~ 3143759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAATCCAAGCAAATTGGGAATCACAAGAGCGATAAGAAAAAGAACATTGCAAAGCAGTGGAAGACCAAACGCCGGACGAAGGATCTGGACCAGATCCACAATGACATGAAGGCGGGGAACATGGAGAAACTGCTGCACCAGGAGGTGGATCACGACGTCACGGGGAGCGCCCAGAATTACTGCCTGCACTGCGCgcGTTACTTTGTTGACTTGAAGACCTTGAAAGACCACTTTAAGACCAAAATCCATAAAAGgagGCTGAAGCAGCTGAGGGAGGAGCCGTACACCcaagaggaggcagagagagcgGCGGGGATGGGTTCCTACATCCCACACAAAGCCGTGGAAGTTCAAACGCAGCCTGTGGTCGAGGACATGAACTGAGCACGGACAGCTTGGCCAACTCTCCGCAGATTACGTCTCGCCCCACAAGAATTAGACTCCCCGACTCTCACTCTGAGACGTGCCCCCTGTTTAACTGTGCAGGGGGTCCTGTTGATAGATTTTAAGACGCATTAGTACATGTAAAGATCTGAGTAAATGATGAGATCTGAGTGCAGTGTTTGTCCTGCAGTGTGGGGGTGCATGAACAGAGGTTCCCCAGCCCTGTTGTGCATTCAAGCTCTCGTGAAATTGCTGGATTGCATCTTTTGGACCGTTACGGGGTTGATTCCCAGACCAGCCCTCATGGACTCAGTACCTTTTAAACCTGCCATACGATTTGTATGTAGATGTGCGGgcagaatatattttctcttaaaatctaatttttggtatttatttcCACTCTGGGTTCTACCATTGAAATTGCATGTCTGGACCCCGACTCTGAAACCGGGGTCATGTATTAAAGAGGTTTAAGATCTTAAATGTCTTTGATTCTTGACAGAGATTGGAAGTGCCTGGCTCAGATGATAAGTGCCTGGGTGTTTGTAGATACTGTGCCCTTGTTAGGAGCTACacataaaaacatcctgtatcttgtacaatatattaaaagaaaagctgCTGGATGTGACCTATGGTCAAATTGAATGTATTAGGTGGTCTCTGATTTGCTGGATTTAAGCATAAGAAATTCTCAAATACAAATTGTGAGTTTTTGgtagcaataaaataaaaattggtcAGTTTATGTGCTGAGAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14821 BUD20; bud site selection protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128445 lncRNA downstream 150159 2990647 ~ 2991248 (-) True G102834
TU128418 lncRNA downstream 186432 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 308224 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 466271 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 652990 2481897 ~ 2488417 (-) True AMCG00010843
TU128510 lncRNA upstream 1505 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 16078 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 16824 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 17338 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 124783 3268542 ~ 3269769 (-) True G102920
AMCG00010878 mRNA downstream 198 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010877 mRNA downstream 34203 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010872 mRNA downstream 97317 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010871 mRNA downstream 109845 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010873 mRNA downstream 157335 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010879 mRNA upstream 24666 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010883 mRNA upstream 47062 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010891 mRNA upstream 115184 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010895 mRNA upstream 177617 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010896 mRNA upstream 273390 3417149 ~ 3418378 (-) True AMCG00010896
TU128333 other downstream 363384 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 380143 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2106533 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2163280 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2991578 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 36211 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 177054 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 182099 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 272609 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1026034 4169793 ~ 4185974 (-) True G103112

Expression Profile