RNA id: AMCG00010883


Basic Information

Item Value
RNA id AMCG00010883
length 1200
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00010883
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3190821 ~ 3209564 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTCTACACAGACTCTCTTTGACTACCAGGAGCTGCTACACAACTCCACTTTCTGCCTGGTGCCCCGCGGACGCCGGCTGGGCTCCTTCCGCTTCCTCGAGTCTCTGCAGGCTGCCTGCATCCCCGTGCTGCTCAGCAATGGCTGGGAGCTGCCGTTCTCCGATGTGATCTACTGGAGCCAGGCTGTGATCGAGGGGGACGAGAGACTCCTGCTGCAGGTGCCCTCGACCGTCCGCTCCATCGGCAATGACAAGATCCTGGCGTTTCGGCAGCGCACGCAGCTACTGTGGGAGGCTTACTTCTCCTCTGTGGACAAGATCGTGCTGACCACACTAGAGaTCATCAAGGACCGCGTGTTCTCACACGTCTCGCGCAACAAGCTGATGTGGAACGCGCTGCCGGGAGGATTACTGGTGCTGCCGGAGTACTCCACCCACCTCGGCCACTTCCCTTTCTACTACCTGAGCCAGGGTATCAGCCCTGGTCAGGAATTCACTGCTGTAATCCACGCCGTCTCACCGTTGGTCTCTCAATCGCAGCCAATAATGAAGCTCCTGCAAGTGATCTCCAAGTCGAAGTACTGTTCACAGACCAGTAGCCGTTTCTTACCCCACAGTGCCATTGAGACAGAGGCTATACTGAGTCTGGATGAAGACACCGTGCTGTTAACGAGTGAGGTGAACTTTGCCTTCATGGTGTGGCGTAGTTTCCCCGACCGGATCGTGGGCTACCCCCCCCGCAGCCATTTCTGGGACAACAGCAAGCAGGTGTGGGGGTACACCTCCAAATGGACCAATGAGTACTCGATCGTGCTGACGGGGGCTGCCTTCTACCACAGGTACTATCACCACCTTTTCACACACTACCTCCCCAATACGCTGCGCGCCCTCGTCGACCAAACGGCCAACTGCGAGGACATCCTTATGAACTTCCTGGTGTCGGCCGTCACCAGACTGCCGCCAATCAAGGTCACACAGAGGAAGCAGTACAAGGAGGTGCAGACGCCACAGGCCATGAAGAGCACGCACTGGGCCAACCCCGATCACTTCTCCCAGCGGCAGGACTGCATCAACGCCTTCGCCCGCTGGTTCGGCTCCATGCCCCTGACGCACTCGCAGTTCCGCCTGGACCCCGTGCTCTTTAAGGACCAGGTCTCTGTCCTGCGCAAGAAGTACAAAGACCTGGAGCGCCCCTGA

Function

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128513 lncRNA downstream 29309 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 29924 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 30785 3159837 ~ 3160036 (-) True G102888
TU128510 lncRNA downstream 45134 3145264 ~ 3145687 (-) True G102887
TU128445 lncRNA downstream 199573 2990647 ~ 2991248 (-) True G102834
TU128569 lncRNA upstream 58978 3268542 ~ 3269769 (-) True G102920
TU128685 lncRNA upstream 211324 3420888 ~ 3424769 (-) True G103006
TU128714 lncRNA upstream 344619 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 574693 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 929056 4138620 ~ 4139637 (-) True G103087
AMCG00010879 mRNA downstream 18832 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010880 mRNA downstream 47062 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010878 mRNA downstream 49612 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010877 mRNA downstream 83617 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010872 mRNA downstream 146731 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010891 mRNA upstream 49379 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010895 mRNA upstream 111812 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010896 mRNA upstream 207585 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010893 mRNA upstream 232877 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010894 mRNA upstream 244359 3453923 ~ 3463743 (-) True AMCG00010894
TU128533 other downstream 8202 3179970 ~ 3182619 (-) True G102902
TU128333 other downstream 412798 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 429557 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2155947 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2212694 975553 ~ 978127 (-) True G102434
TU128662 other upstream 111249 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 116294 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 206804 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 960229 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1433088 4642652 ~ 4650106 (-) True AMCG00010925

Expression Profile