RNA id: AMCG00010884


Basic Information

Item Value
RNA id AMCG00010884
length 597
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00010884
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3301956 ~ 3310953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCCATTTGACCCCACCACCAACATCAACTCAGCAGTGTCTAATGTGATCTGCACCATTGTGTTTGGAGACCGGTTTGACTACAGCGACTCCCAGTTCCTACGACTCCAGCAACTTCTCAGCCAGAATGTTAAGCTCGTCACCTCCCCTGCGATGCGGCTGTACGACATCTCCCCTTTCCTGGGGTCCTTTCTTGCCAATTTcaagaaaatgtacagtaatacTTTAGAGTATCGGACGTTCTTCTCCAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAAGAGCAGGAGGAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGTCAGCTTTCAGAGAAGTATGGCGATGTGTTCACCTTTCACATGGGTAGACATAAGGTCTTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGCGAGAGAGGCCTGACGCATACCTTCACATTGTTTGCGAAGGGCACC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 171692 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 198314 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 274559 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 524037 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 531483 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 121864 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 123968 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 148911 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 281717 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 738987 4049938 ~ 4083586 (+) False G103078
AMCG00010885 mRNA upstream 18626 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 113086 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 119300 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010874 mRNA upstream 122925 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010875 mRNA upstream 134333 3145114 ~ 3167623 (+) True AMCG00010875
AMCG00010886 mRNA downstream 20810 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010889 mRNA downstream 38805 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010890 mRNA downstream 77304 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010888 mRNA downstream 110131 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 126370 3437321 ~ 3439509 (+) True AMCG00010887
TU128314 other upstream 540447 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 1228714 2070677 ~ 2073242 (+) False AMCG00010834
TU128574 other downstream 20633 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 20768 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 52316 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 60102 3371053 ~ 3398506 (+) False G102921
TU128580 other downstream 60102 3371053 ~ 3398506 (+) False G102921

Expression Profile