RNA id: AMCG00010885



Basic Information


Item Value
RNA id AMCG00010885
length 990
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00010885
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3277827 ~ 3283330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTGTGATCGCAGTTCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTAACGATAGCCTCCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCTGCTTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAATCTCAATATTCTGGACTTGAAGAAACCTCATGAAACTTTATGTCAGCTTTCAGAGAAGTATGGCAATGTGTTCACCTTTCACATGGGAAGGGATAAGTACTTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTCGGCGAGAGAGGCCTGACGCGTGTGTCCACAATGTTTGGAAAGGGCACCGGCGTCGTATTTGGATCTGGGGAGTCATGGAAGACCATGCGGAGATTTACTCTCTCCACCTTGCGGGATTTCGGCATGGGAAAGAGAACCATCGAGGACAGGATAGTGGAGGAGGCCCAGTGTCTGTTGGATGTCTTTGAGTCACATAAAGGTGACCCGTTTGACCCCATCATTAACATCAACTCAGCGGTGTCTAATGTGATCTGCACCATTGTGTTTGGAGACCGGTTTGACTACAGCGACCCCCAGTTCCTACGACTCCAGCAACTTGTCAATCAGAATGTTAAGCTCGTCACCTCCCCTGCGATGCGGCTGTACGACATCTCCCCTTTCCTGGGGTCCTTTCTTGCCAATTTCAAAAAACTATCCAGTAATGTTTTAGAGAATCGTACATTCTTCTCCAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTGAGGAGCTTCATTGACACTTTCATTGTCAAACAGCAGGAGGAGaaaGCTAAAAAcccaaatacttatttccatgAGATGAACATGGTGTCCACTGCAATGAACCTCTTTGCTGCAGGAACAGAAACAACGTCCACCACTCTGCGCTGGGGACTTCTAATGATGATGAAGTACCCTCATATACAG

Function


GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 147563 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 174185 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 250430 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 499908 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 507354 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 149485 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 151589 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 176532 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 309338 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 766608 4049938 ~ 4083586 (+) False G103078
AMCG00010881 mRNA upstream 88957 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 95171 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010874 mRNA upstream 98796 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010875 mRNA upstream 110204 3145114 ~ 3167623 (+) True AMCG00010875
AMCG00010876 mRNA upstream 149578 3112434 ~ 3128249 (+) True AMCG00010876
AMCG00010884 mRNA downstream 18626 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010886 mRNA downstream 48431 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010889 mRNA downstream 66426 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010890 mRNA downstream 104925 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010888 mRNA downstream 137752 3421082 ~ 3427031 (+) True AMCG00010888
TU128314 other upstream 516318 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 1204585 2070677 ~ 2073242 (+) False AMCG00010834
TU128591 other downstream 26408 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 48254 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 48389 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 79937 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 87723 3371053 ~ 3398506 (+) False G102921

Expression Profile