RNA id: AMCG00010886


Basic Information

Item Value
RNA id AMCG00010886
length 1278
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00010886
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3331719 ~ 3338416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGATCGCAGTGCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTAACAACAGCCTTCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATTGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGCCAGCTTTCAGAGAAGTATGGAAATGTGTTCACCTTTCACATGGGCAGGCAAAAGTGTGTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGAGAGAGAGGCCTGACGCATTCATCCAAAATGTTTGCAAAGGGCACTGGCATCATAGTAGGAGTTGGGGAGTCATGGAAGACCATGCGGAGGTTTACTCTCTCCACCTTGCGGGATTTCGGCATGGGAAAGAGAACCATCGAGGACAGGATAGTGGAGGAGGCCCAGTGTCTGTTGGATGTCTTTGAGTCCTATAAAGGTGACCCATTTGACCCCACCACTAACATCAGCTCAGCGGTGTGTAATGTGATCTGCAGCATTGTGTTTGGAGACCGGTTTGACTACAGCGACTCCCAGTTCCTACGACTCCAGCAACTTGTCAGCCAGAATGTTAAGCTCGCCACCTCCCCTGCGATGCGGCTGTACAACATCTCTCCTTTCTTGGGGTCCTTTCTTGCcgattttaagaaaatgtacagcaaCTCTCTTGAGAATCGTATGTTCTTCTCAAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTAAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGAGGAGgAAGCTAAAAactcaaatacttatttccatgAGATGAACATGGTGTCCACTGCAGGGAACCTCTTTGCTGCGGGAACAGAAACTACATCCACCACTCTGCGCTGGGGGCTTCTAATGATGATGAAGTACCCTCATATACAGGAGAAGGTTCATGCTGAGATCCAAGCCATGATTGGGAAAGAGCGCCCCCCAAGGGTGGAGGACCGCAAGGACATGCCTTACACTGACGCGGTGCTGCACGAGATCCAGAGGTTTGGTAATGTGGCCCCCATGAACCTGCTACATCAGACCAAATCAGACATTGACTTCAAGGGCTACAGAATCCCCAAGGTGAGCCTCCCCGACACAACAGTCCACCTCACACAGGCAGCACACACTGTGACTGAGTGTCTGGTCAATCCAGACCTCAACATCTCTAATTTCTTG

Function

GO: NA

KEGG:

id description
ko04950 Maturity onset diabetes of the young

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 201497 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 228119 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 304364 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 553842 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 561288 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 94399 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 96503 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 121446 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 254252 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 711522 4049938 ~ 4083586 (+) False G103078
AMCG00010884 mRNA upstream 20810 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010885 mRNA upstream 48431 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 142891 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 149105 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010874 mRNA upstream 152730 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010889 mRNA downstream 11340 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010890 mRNA downstream 49839 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010888 mRNA downstream 82666 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 98905 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 211049 3549465 ~ 3550451 (+) True AMCG00010897
TU128591 other upstream 20808 3309738 ~ 3310953 (+) False AMCG00010884
TU128314 other upstream 570252 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 1258519 2070677 ~ 2073242 (+) False AMCG00010834
TU128578 other downstream 24851 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 32637 3371053 ~ 3398506 (+) False G102921
TU128580 other downstream 32637 3371053 ~ 3398506 (+) False G102921
TU128592 other downstream 88083 3426499 ~ 3428429 (+) False AMCG00010888
TU128618 other downstream 98202 3436618 ~ 3443534 (+) True G102947

Expression Profile