RNA id: TU128590



Basic Information


Item Value
RNA id TU128590
length 747
RNA type TUCP
GC content 0.50
exon number 4
gene id AMCG00010886
representative False

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3331719 ~ 3338416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTATAGGAGTAGCTATAGGCAAAGAGGAACTCTCAAGGAAACATGTCTGTGATCGCAGTGCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTAACAACAGCCTTCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATTGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGCCAGCTTTCAGAGAAGTATGGAAATGTGTTCACCTTTCACATGGGCAGGCAAAAGTGTGTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGAGAGAGAGGCCTGACGCATTCATCCAAAATGTTTGCAAAGGGCACTGGCATCATAGTAGGAGTTGGGGAGTCATGGAAGACCATGCGGAGGTTTACTCTCTCCACCTTGCGGGATTTCGGCATGGGAAAGAGAACCATCGAGGACAGGATAGTGGAGGAGGCCCAGTGTCTGTTGGATGTCTTTGAGTCCTATAAAGGTGACCCATTTGACCCCACCACTAACATCAGCTCAGCGGTGTGTAATGTGATCTGCAGCATTGTGTTTGGAGACCGGTTTGACTACAGCGACTCCCAGTTCCTACGACTCCAGCAACTTGTCAGCCAGAATGTTAAGCTCGCCACCTCCCCTGCGATGCGGGTATGGGACTCCAGGGACATTGTCCTCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 201455 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 228077 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 304322 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 553800 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 561246 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 96838 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 98942 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 123885 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 256691 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 713961 4049938 ~ 4083586 (+) False G103078
AMCG00010884 mRNA upstream 20768 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010885 mRNA upstream 48389 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 142849 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 149063 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010874 mRNA upstream 152688 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010889 mRNA downstream 13779 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010890 mRNA downstream 52278 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010888 mRNA downstream 85105 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 101344 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 213488 3549465 ~ 3550451 (+) True AMCG00010897
TU128591 other upstream 20766 3309738 ~ 3310953 (+) False AMCG00010884
TU128314 other upstream 570210 2756302 ~ 2761509 (+) False AMCG00010854
TU128109 other upstream 1258477 2070677 ~ 2073242 (+) False AMCG00010834
TU128578 other downstream 27290 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 35076 3371053 ~ 3398506 (+) False G102921
TU128580 other downstream 35076 3371053 ~ 3398506 (+) False G102921
TU128592 other downstream 90522 3426499 ~ 3428429 (+) False AMCG00010888
TU128618 other downstream 100641 3436618 ~ 3443534 (+) True G102947

Expression Profile