RNA id: AMCG00010889


Basic Information

Item Value
RNA id AMCG00010889
length 2911
RNA type mRNA
GC content 0.49
exon number 20
gene id AMCG00010889
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3349756 ~ 3386357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAAAGATGTCTCTGATCGCAGTGCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTCACAACAGCCTTCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGTCAGCTTTCAGAGAAGTATGGAAATGTGTTCACCTTTCACATGGGCAGGCAAAAGTGTGTAGTCCTGACTGGATATGAAACCGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGCGAGAGAGGCCTGACGCGTGCATCCACAATATTTGGAAAGGGCACCGGCATCGTATTTGGATCTGGGGAGTCATGGAAGACCATGCGGAGGTTTACTCTCTCCACCTTGCGGGATTTCGGCATGGGAAAGAGAACCATCGAGGACAGGATAGTGGAGGAGGCCCAGTGTCTGTTGGATGTCTTTGAGTCACATAAAGGTGACCTATTTGACCCCACCACTAACATCACCTCAGCGGTGTCCAATGTGATCTGCACCATTGTGTTTGGAGACCGGTTTGACTACAGCGACCCCCAGTTCCTACGACTCCAGCAACTTCTCAGCCAGAATATTAAGCTTGCCATGTCCCCTGCGATGCGGCTGTACGAAATCTCCCCTTTCCTGGGGTCCTTTCTTGCGGATTTCAAGAAAGTGTACAGCAACACATTAGAGAATCGGACGTTCTTCTCAAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTGAAGAGCTTCATTGACGCTTTCATTGCCAAACAGCAGGAGGAGgAAGCAAAAAAcccaaatacttatttccatgAGGTGAACATGGTGTCCACTGCAGGGAACCTCTTTGGTGCGGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGCTTCTGATGATGATTAAATACCCACATATACAGGGAAGTGACAGATTCAAAATCCTTCCTCTGCACACCAGGCTCCACCTCGAATCTGAGGCTACTGGAGAGCCCCTCCCGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGTCAGCTGTACAACATCTCCCCTTTCCTGGGGtcctttcttgtggatttcAACAACACATTAGAGAATCAGACGTTCCTCTCAAACTACAACCAAGAGCGCAAAGACATTGTGGATAGAAATGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGAGGAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGTCAGcttTCAGAGAAGTATGGCAATGTGTTCACCTTTCACATGGGTAGACATAAGGTCTTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTCGGCGAGAGAGGCCTGACTCATACGTCCACAATGTTTGGAGAGGGCACCGGTGACCCATTTGACCCCACCACTAACATCAACTCGGCAGTGTCTAATGTGATCTGCACCATTGTGTTTGGAGACCGGTTTGACTACAACGACTCCCAGTTCCTACGACTCCAGCAACTTGTCAACCAGAATATTAAGCTCGTCACCTCCCCTGCGATGCGGCTGTACGACATCTCCCCTTTCCTGGGGTCCTTTCTTGCCAAtttcaagaaaatatacagtaatatttTTGAGATTCAGATGTTCTTCTCCAACTACTACCATGAACGCCTGGACATTGTGGATAGAAACGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGAGGAGAAAGCTAAGAACCCTAATACTTATTTCCATGAGATGAACATGGTGACCACTGCAAGGAACCTCTTTGCTGCAGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGCTTCTGATGATGATTAAATACCCTCTCATACAGGTGTATAGACAAAGAGCAAACATGTCTGTGATCGCAGTGCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTCACAACAGCCTTCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTGAATATTCTGGACATGAAGAAACCTCATGAAACTTTATGTCAGcttTCAGAGAAGTATGGCAATGTGTTCACCTTTCACATGGGTAGACATAAGGTCTTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGCGAGAGAGGCCTGACGCATACCTGCACAATGTTTGCGAAGGGCACCGGTGACCCGTTTGACCCCATCATTAACATCAACTCAGCGGTGTCTAATGTGATCTGCACCATTGTGTTTGGAGACCGGTTTGACTACAGCGACCCCCAGTTCCTACGACTCCAGCAACTTCTCAGCCAGAATGTTAAGCTCACCACCTCCCCTGCGATGCGGCTGTACAACATCTCCCCTTTCCTGGGGTCCTTTCTTGCGGATTTCAAGAAAATGTACAGCAACACATTAGAGAATCAGACGTTCCTCTCAAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTAAGGAGCTTCGTTGATGCTTTCATTGCCAAACAGCAGGAGGAGcaaaaaaaaaatatttatttccatgaGATGAACATGGTGTCCACTGCAAGGAACCTCTTTGGTGCGGGAACCGAAACTACATCCACCACTCTGCGCTGGGGGCTTCTGATGATGATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 219492 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 246114 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 322359 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 571837 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 579283 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 46458 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 48562 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 73505 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 206311 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 663581 4049938 ~ 4083586 (+) False G103078
AMCG00010886 mRNA upstream 11340 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010884 mRNA upstream 38805 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010885 mRNA upstream 66426 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 160886 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 167100 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010890 mRNA downstream 1898 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010888 mRNA downstream 34725 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 50964 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 163108 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 284098 3670455 ~ 3677090 (+) True AMCG00010903
TU128590 other upstream 13779 3331719 ~ 3335977 (+) False AMCG00010886
TU128591 other upstream 38803 3309738 ~ 3310953 (+) False AMCG00010884
TU128314 other upstream 588247 2756302 ~ 2761509 (+) False AMCG00010854
TU128109 other upstream 1276514 2070677 ~ 2073242 (+) False AMCG00010834
TU128592 other downstream 40142 3426499 ~ 3428429 (+) False AMCG00010888
TU128618 other downstream 50261 3436618 ~ 3443534 (+) True G102947
TU128716 other downstream 190878 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 663581 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1252075 4638432 ~ 4642358 (+) False AMCG00010922

Expression Profile