RNA id: AMCG00010890


Basic Information

Item Value
RNA id AMCG00010890
length 438
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00010890
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3388255 ~ 3397892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATAAGGAGAAACCGGAAACCGGGACTcttTCAGAGAAGTATGGCAATGTGTTCACTTTTTACATGGGTAGGCATAAGTTCTTGGTCCTGACTGGATATGAAGTGAAGGAGGCCTTGCTGTACGAAATCTTTCCTTTCCTGGGGTCTTTTCTTGCCAATTTCAAGAAAATGTCCAGTAATAATTTAGAGACTCAGATGTACTTCTCCAACTACTACCATGAGCGCAAGGACATTGTGGATAGAAACGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGAGGAGgaaataaaaaacccaaatacttatttcaatGAGGTGAACATGGTGTCCACTGCAGGGAACCTTTTTGGTGCGGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGCTTCTGCTGCTGATGAAGTACCCTCATATACAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 257991 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 284613 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 360858 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 610336 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 617782 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 34923 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 37027 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 61970 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 194776 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 652046 4049938 ~ 4083586 (+) False G103078
AMCG00010889 mRNA upstream 1898 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010886 mRNA upstream 49839 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010884 mRNA upstream 77304 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010885 mRNA upstream 104925 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 199385 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010888 mRNA downstream 23190 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 39429 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 151573 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 272563 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010905 mRNA downstream 433422 3831314 ~ 3835049 (+) True AMCG00010905
TU128574 other upstream 4388 3331584 ~ 3383867 (+) False G102921
TU128590 other upstream 52278 3331719 ~ 3335977 (+) False AMCG00010886
TU128591 other upstream 77302 3309738 ~ 3310953 (+) False AMCG00010884
TU128314 other upstream 626746 2756302 ~ 2761509 (+) False AMCG00010854
TU128107 other upstream 1315013 2071406 ~ 2073242 (+) True AMCG00010834
TU128592 other downstream 28607 3426499 ~ 3428429 (+) False AMCG00010888
TU128618 other downstream 38726 3436618 ~ 3443534 (+) True G102947
TU128716 other downstream 179343 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 652046 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1240540 4638432 ~ 4642358 (+) False AMCG00010922