Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00010891 |
| length | 975 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 2 |
| gene id | AMCG00010891 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030133.1 |
| NCBI id | CM030133.1 |
| chromosome length | 32682731 |
| location | 3258943 ~ 3263464 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | biological_process |
| GO:0006486 | protein glycosylation | biological_process |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0050508 | glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | molecular_function |
| GO:0050509 | N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity | molecular_function |
| id | description |
|---|---|
| K02366 | EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU128513 | lncRNA | downstream | 97431 | 3161097 ~ 3161512 (-) | True | G102890 |
| TU128512 | lncRNA | downstream | 98046 | 3160583 ~ 3160897 (-) | True | G102889 |
| TU128511 | lncRNA | downstream | 98907 | 3159837 ~ 3160036 (-) | True | G102888 |
| TU128510 | lncRNA | downstream | 113256 | 3145264 ~ 3145687 (-) | True | G102887 |
| TU128445 | lncRNA | downstream | 267695 | 2990647 ~ 2991248 (-) | True | G102834 |
| TU128569 | lncRNA | upstream | 5078 | 3268542 ~ 3269769 (-) | True | G102920 |
| TU128685 | lncRNA | upstream | 157424 | 3420888 ~ 3424769 (-) | True | G103006 |
| TU128714 | lncRNA | upstream | 290719 | 3554183 ~ 3559393 (-) | False | AMCG00010901 |
| TU128741 | lncRNA | upstream | 520793 | 3784257 ~ 3784631 (-) | True | G103050 |
| TU128784 | lncRNA | upstream | 875156 | 4138620 ~ 4139637 (-) | True | G103087 |
| AMCG00010883 | mRNA | downstream | 49379 | 3190821 ~ 3209564 (-) | True | AMCG00010883 |
| AMCG00010879 | mRNA | downstream | 86954 | 3168425 ~ 3171989 (-) | True | AMCG00010879 |
| AMCG00010880 | mRNA | downstream | 115184 | 3141407 ~ 3143759 (-) | True | AMCG00010880 |
| AMCG00010878 | mRNA | downstream | 117734 | 3128252 ~ 3141209 (-) | True | AMCG00010878 |
| AMCG00010877 | mRNA | downstream | 151739 | 3103974 ~ 3107204 (-) | True | AMCG00010877 |
| AMCG00010895 | mRNA | upstream | 57912 | 3321376 ~ 3327520 (-) | True | AMCG00010895 |
| AMCG00010896 | mRNA | upstream | 153685 | 3417149 ~ 3418378 (-) | True | AMCG00010896 |
| AMCG00010893 | mRNA | upstream | 178977 | 3442441 ~ 3450634 (-) | True | AMCG00010893 |
| AMCG00010894 | mRNA | upstream | 190459 | 3453923 ~ 3463743 (-) | True | AMCG00010894 |
| AMCG00010892 | mRNA | upstream | 211168 | 3474632 ~ 3483623 (-) | True | AMCG00010892 |
| TU128533 | other | downstream | 76324 | 3179970 ~ 3182619 (-) | True | G102902 |
| TU128333 | other | downstream | 480920 | 2739816 ~ 2778023 (-) | True | G102762 |
| TU128350 | other | downstream | 497679 | 2758478 ~ 2761264 (-) | True | G102774 |
| TU127939 | other | downstream | 2224069 | 1033921 ~ 1034874 (-) | True | AMCG00010806 |
| TU127921 | other | downstream | 2280816 | 975553 ~ 978127 (-) | True | G102434 |
| TU128662 | other | upstream | 57349 | 3320813 ~ 3419176 (-) | False | G102990 |
| TU128675 | other | upstream | 62394 | 3325858 ~ 3327559 (-) | False | AMCG00010895 |
| TU128666 | other | upstream | 152904 | 3416368 ~ 3419176 (-) | True | G102990 |
| TU128814 | other | upstream | 906329 | 4169793 ~ 4185974 (-) | True | G103112 |
| TU128916 | other | upstream | 1379188 | 4642652 ~ 4650106 (-) | True | AMCG00010925 |
