RNA id: AMCG00010894


Basic Information

Item Value
RNA id AMCG00010894
length 3342
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00010894
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3453923 ~ 3463743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGGAGACTTGCTGGAACATGAGGAAATCCCACTCTTGGTGGTGACAACCCCTGACGCCCGATTCCCAGCTCACAGGATGCCAGTGTGAACGGCCGGCCGGACCAGAAGTTTTGGTGTGATCTCACTTTGAATCGAGcttccaccaccaccaccacaaatTGGCCTCTTCCACCAACAGCTCCTCTTGCCCGACATGCCAACTGGGCTTCTTCCTGAGCTCTGAGGGGCTTGGCACAGCCCCCAATCCCACCCATTCCCTCTCCCAGTGCCCCTCCTAGCCTCCACAGCACGATGGAGTCCGATCCCAGCGCTGAGGGCCTGCTGGACCTGAGTCACCTGAGCGAGGAGGAGCAGACCACCATCCTCAACGTCCTGCTGAGGGACTCGGAGCTGCGCTGCCAGGATGAGGGCCGAGTCAGTAAGCTGCGTCACACGGTGTCTGACCCCTGGACGCTGAAGAGCCTCACCGGGGAGTGGTTCAATGAGGTCCGGTCCAAACGCCACCGGGACAAGAAGTATGGCTCCGATATCGTCCGTGCGTCCATCCGCCGCAAGAAGAAGCCCAAAGCGGAGAAGGGGAGGGACCCATTCTCCGACAGCATCCCCGAGACCCTGGCAGTGGCCAACGGCGGGGTTCCCACCCTGGCCACACCAGGGCAGGCTGGCACGGAGACGCAGGAAAAAACCCAGCTGTACTGCCAAGGACAAGAGTCTACCGTTATCAAGAAAGGAGAAACTGAACCAAAGACTACAGATGGGCAGCAGCTGAAGGTCCCAACACTATCGGTGCAGagAGTCTCCCCTTCAGAGGATGACTTTGACTTGGTGTCCCTGGCCAGCCCTCCGCCGCAGCCCCTCCGAGACCCCCTGAGGCCCAGCAGCTCTATGTCCAGCTTGCAGTCCAACAACACACTCAGCGGCAGTATGATGAGCCTGTTCAGCTCGGGGGAGTTCGGCACACTGGAGGTGCGGGGCAGCGTGCAGTTCTCCCTGCGCTACGACCCCTCCAAGGAGGAGCTGCGGGTGCTGGTGTGCCGGTGCCAGGACTTGGCAGAGGCCCGGAAGCAGCGCTCTGACCCGTACGTGAAGACTTACCTGCTCCCTGATAAATCCTCTCAGAGTAAGAAGAAGACCTCCGTGAAGAAGAAGACGATCAATCCTGTATTTGATGAAACCCTCAAATACAAGATAAAGATGCTGGAGCTGAAGGACCGCACCCTGAACCTGTCCGTGTGGCACCACGACCCCCTGCGCCGCAACATCTTTCTGGGAGAGGTGGAGGTGGCCATGGCGACGTGGGACTGGAGCCACACCCAGCCTGCCTGGCATGACCTGGTGCCCAGGATCCAGATGTCCCAGGACACTCTCGGATCCAGAGGAACGATCATCCTTTCTTTGAAGTTTGTTCCCGCCGGATCAGATGGTAACGGCATGCCCTTGACTGGGGAGCTCCACGTGTGGGTGAAGGAAGCGCAAGGCCTGATTCCCACCAAAGGAGGGACTGTGGACTCCTTTGTCAAGAGTTACGTGCTTCCAGACGAGAGCAAGTCGAGCCGGCAGAAGACCCGTGTTGTGAAGAAGACCCTGAGCCCCACCTACAATCACACCATGGTGTACGACGGCTTCCAGTTGGAGGACCTGCGGGAGGCCTGTGCCGAGTTCACGGTTTGGGAGCACGACACCTTCTCCAGCCAGCTGCTGGGCGGGGTGCGCCTCAGCCTGGGCACGGGGGTCAGCTATGGGCAGGCAGTGGGCTGGATGGACTCCACGGAAGAGGAGGTGACCGCCTGGAAGGCCATGACCCAGAAGCCCAACACCTGGGTGGAATCAGTGCTACCCCTGAGGACCAACCTTACACCTCGTCAGATGGCCAAGGAGAACTGATGCGAGAGCCTGGGCACCTCGGGAGCCAAGAAACGGGCAAAGCGTCTCTACACGGCACAGAGAAATGACACTCCTTGAACTGCCAGATAATGAGAATCGAGGGGCTCAATCCACAcattttctctgtttgtttttagaacGATGGGGGACGTGGCCTACAGTGACtctctgaattattttattattttatttttcagattcttTAGCGTGTCTAAAAAGTACTAGCCTGTGTGCCAGCATCCCTCTTATTTCTTTCTTCACTGAGATGGGATATTTATCGTTTCTATCTTAGTTTAGCGGCAGAAACGTGGGcataaaaacctaaaaaaaacactcatcCTTTCCATTGTTAATGCAGACTTGAACTGAGATGAAGCTCTCTCATCAACCctaagttgttttgtttttactggtaACATAACAATCCGGGTGCAGTGGTTCAGTGCTCTGTGATTACATCTCTTCATGTGGCAAGGGATGCATGCTACTGAGCTCAAAAGGTTGGGGTGGTAATTTGTTAAATCATCATTTCCTTGATATTTCATTTCATAGCAGTTCCTTCAACTTTGGTGAGAGGACTTCTGAAAGCTGTATGCATTTAGCAGTTTCCAAATCGCACACTACTTCCATTGCATAAACATTTTTCTCTGTATTCTGCAACTGTGGAATGTTTTGCAAATGACTTTTCCTTTCATTCAGCTTTCATTCAAGGCCATTTGTCATTTAATTCCTTATTATGACTAGAAATATAAACAGGTTTTAAGTAAGCGTAGTGAACTGGGCAGGACGTGTGTCGTAGGAGGGGTATGTACTGTTTGACATGAAATGAGAACGATGGGCAATGCTGTAAGCCAATCCTGACATTTGCATCAGCTAAGCCTGTGTGAGGTTTGTTCTGGACACATCCGCAAATGCATCGGAGTGAAAAGGATTCGCTGTCCCCACCCTGAGAACAATGGATGTCCAGAATTGTGCTTCCCCCTCTGCACTCTTTTAATATCTTATTGTATTGGTTCAATGGCAGATTGTTGATGGAAATGGTTCCGAAATATTCACTGTATTATACTCAACCTTTCACTGTTATACTCGATCTGTACACCTGTCCtagaagtttgttttttaacagatgGTCTAAGTGAGTGCTTGAAAATGCAGAACAGTGATGAAACAGCCTGAACACATTCATGAGGATGTTgggaatgtctttttttttaaattaaagaccATTTTTAATTGGGGAAACAAATGTTATGAAGTATTCTCTggtggttttcttttgtattaggtcaatgttttatgtcatttaatcaattttcaGTATGATTGCAGTGTAATATTAACCACACATTACAATACTGTTTGGATGTATTCCTCTGTAGAGGTACAGATagttgacaaattaaaggaaaaaccatcataaagtgtctcagtaaggtgttgggcaccacgagcccc

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128685 lncRNA downstream 29154 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 184154 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 292411 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 293026 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 293887 3159837 ~ 3160036 (-) True G102888
TU128714 lncRNA upstream 90440 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 320514 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 674877 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 686756 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 688775 4152518 ~ 4152748 (-) True G103095
AMCG00010893 mRNA downstream 3289 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010896 mRNA downstream 35545 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010895 mRNA downstream 126403 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010891 mRNA downstream 190459 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010883 mRNA downstream 244359 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010892 mRNA upstream 10889 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010900 mRNA upstream 21798 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010898 mRNA upstream 35259 3499002 ~ 3507995 (-) True AMCG00010898
AMCG00010899 mRNA upstream 50899 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010901 mRNA upstream 90243 3553986 ~ 3574815 (-) True AMCG00010901
TU128662 other downstream 34747 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 34747 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 126364 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 271304 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 692659 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 706050 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1178909 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1670467 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2241027 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4507881 7971624 ~ 8019522 (-) False G103832

Expression Profile