RNA id: AMCG00010895


Basic Information

Item Value
RNA id AMCG00010895
length 1056
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00010895
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3321376 ~ 3327559 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGATCGCAGTGCTGCTGGCGAACACTGTCACAGTGTCTCTGGTCTTCATTTTCACAACAGCCTTCTTCTTCTACCTTCTCTTCAAACCATCCAAGTCATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATTGGGAACCTCAATATTCTGGACGTGAAGAAACCTCAGGAAACTTTATGCCAGcttTCAGAGAAGTATGGTGATGTGTTCACCTTTCACATGGGTAGACATAAGGTCTTGGTCCTGACTGGATATGAAACAGTGAAGGAGGCCTTGGTGAATCGGGCAGATGATTTTGGCGAGAGAGGCCTGACACATACGTCCACAATGTTTGCAAAGGGCACCGGTAACTGTTTTCTTCCTATAGTTTCTGTGGGTCACTTGTACATGGAAGAACACGTGGAAGACAGTTCTCAAAACAAGGAGACAAAACCTgcaTCATATTTGGATATGGGGAGTGACCCGTTTGACCCCACCACCAACATCAACTCAGCGGTGTCTAATGTGATCTGCAGCATTGTGTTTGGAGACCGGTTTGACTACAGCGACCCCCAGTTCCTACGACTCCAGCAACTTGTCAGCCAGAATGTTAAGCTCGCCACCTCCCCTGCGATGCGGGTATTGGACTCCAGGGACATTGTCCTCTCCATAATTCAGTGTGGTCACAAAGCACATGCTTCTCTGTACGACATCTCCCCTTTCCTGGGGTCCTTTCTTGCCAATTTcaagaaaatgtacagtaatacTTTAGAGAATCGGACGTTCTTCTCCAACTACTACCATAAGCACAAGGACATTGTGGATAGAAATGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGACGAGaatGCTAAAAAcccaaatacttatttccatgAGATGAACATGGTGACCACTGCAGGGAACCTCTTTGCTGCAGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGcttctgatgatgatgaaatacCCTCTCATACAGGGTGAGTCGGGACACGAGCTCTGGGGGCCTCTAGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128569 lncRNA downstream 51607 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 159864 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 160479 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 161340 3159837 ~ 3160036 (-) True G102888
TU128510 lncRNA downstream 175689 3145264 ~ 3145687 (-) True G102887
TU128685 lncRNA upstream 93368 3420888 ~ 3424769 (-) True G103006
TU128714 lncRNA upstream 226663 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 456737 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 811100 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 822979 4150499 ~ 4150917 (-) True G103094
AMCG00010891 mRNA downstream 57912 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010883 mRNA downstream 111812 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010879 mRNA downstream 149387 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010880 mRNA downstream 177617 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010878 mRNA downstream 180167 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010896 mRNA upstream 89629 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010893 mRNA upstream 114921 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010894 mRNA upstream 126403 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010892 mRNA upstream 147112 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010900 mRNA upstream 158021 3485541 ~ 3495838 (-) True AMCG00010900
TU128533 other downstream 138757 3179970 ~ 3182619 (-) True G102902
TU128333 other downstream 543353 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 560112 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2286502 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2343249 975553 ~ 978127 (-) True G102434
TU128666 other upstream 88848 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 842273 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1315132 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1806690 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2377250 5704770 ~ 5748564 (-) True G103395

Expression Profile