RNA id: AMCG00010898


Basic Information

Item Value
RNA id AMCG00010898
length 4836
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00010898
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3499002 ~ 3507995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCTTCgtttgttttcttccaggaaTGTCGGATCGCACATCCTATGGTCAAGTGCACTTACTGCAGAACAGAGTTTCAGCAGGAGAGcaaaaccaacacaatatgTAAGAAGTGCGCACAGAACGTCAAGCTGTACGGCACACCCAAGCCCTGCCAGTACTGTAACATCATCGCAGCTTTCATCGGCAACAAATGCCAGCGCTGCACGAACTCCGAGAAGAAGTATGGCCCCCCCCACACGTGCGAGCAGTGCAAGCAGCAGTGCGCTTTCGACCGCAAGGACGACCGGAGAAAGGTGGATGGGAAGCTGCTGTGCTGGCTCTGCACCCTCTCCTACAAGCGAGTTCTGCAGAAGACCAAAGAGCAGCGCAAGCACCTGAGCGCCTCCTCGCACTGCAGCCTCCCGGAGAAGGAGCCGTTCACGCGCCTCAGCAACAGCAGCCACTACAACAGtCAGAAAACCCTGTCCACTTCTTCCATACAAAACGAAATCCCAAAGAAAAAGCCCAAGTTTGATGCCATCTCGAGTAATGGAGACAGCAGTTTCTCGCCAGACCTGGCGCTGGACTCCCCTGGCACCGACCACTTCGTCATCATCACTCAGCTGAAGGAGGAGGTGGCCACGCTGAAGAAGATGCTGCACCAGAAGGACCAGCTCATactggagaaggagaagaagATCACAGAGCTCAAGGCTGAGTTCCAGTACCAGGAGGCCCAGATGAGGGCCAAGATGAATCAGATGGAGAAGACGCACAAGGATGTTGTGGAGCAACTGCAGGCCAGGAACAGGGAGCTCATGAAGCAGGTGGCCGGCCTCTCCAAGGGCAAGAAGGCAGAGAAGCCGGGAGCCATGACCTCGCCCTGAGGAGAGAGGACTGCATCGGGAGGGCAGGGTAACACCTGGCAGCTCGGCACAGCACGCCTGTTAATGCCCAGCACAGCCCGCGAGAGCTGGCATCCCTTATTGACTTCAGTGGGGTTTTGAAACCATTCAGAGCAATATGACACGGCCTTGGAATctgttgttttgctgtgtttcGGCTGCAGCTTCCGGCCAAGGAGGGTGACGGGAGTGCCTCCTAAACTGACCTTCGAACCTTGATTGTCTTTGAATCGTGGCTATCCAAATCGGCACAACTCTTTTTACCCGTACATCCCATGTGCAGTacagtttaacagtttaaaatatatatagccttGGTTAAGAACGTTTCTCAAAGTTCATTGAAGTCAAAACAAGATCCTAATTCTGCTGTTTATACATAAGAGTATGTAAAGTGGTGCCCACTGGTTTGACTCTTGTTTTATGTCAAAGTATCGTACCTTTTAATAGCCTAAACAAATAACAGCCTCATGTCACAGGGCAATCGTAAAGTCATCTGAACGAGTGTGTTGTAATGTGGACGCAACGTTCCTCCACTGATCCTCAACACAAAACATCAGCATCAACTTATTTCATGAGACTCTCTGCCCAAATAGTAGTATTTTGCTCCAACTAGAATAGTGTTTCCTTAGAATATACTGAATTGATGCTATGGtggaatacaaatgtaaatcgTAAGGGAACAGTGCATTCATGGACATGTATTTAATACAGCAAATGATGTTGGGGAAGAAAAAGCATCACGATAGCAATTCAAACATGATTCTCTTTTTAACAGAATGCCCATGTCTTTGTCAGTATTATCAACTCCTTCCAGACCTTAATTTATATGAGACTGTGCTAAAGGAAAATGTTAGGAAACTATGTAGTttatcttctttttcttttaaatgaacttGATACAAACTATGAGCAGAATGACTTGTAAATAATgggaaacacacaaaaaatattcacCTCGTGTGACCAAATATCTGCTTGGCCTCTTCAAATATTGGAAATTAGCAGTCGCAGCAACACATACTTACGATTCTGATTCACCTAAAACGCCAATGAAGATGATAAAGATGACAAATAAGACTAAATGTTGGTGCTTATGAAATAATTGACTGTTTTCACGTTGTTCAGAATTGATCGAGGAAAGACAGTGTTCTGGAGCTCCCTGGAAGACGAGGACTGTCAGTGTTGTTTTGGGCAGATTTCCTGTCCTACAGGTCTTTGTGTGACATGGAGAAGAGATGGCTGTTCAAACGTTTGTTACTAGACCAACTTTCTATCATTAGATTTTTAAtggaatataataatattacaacaTATTTAGTATGAATTTATATGTGGGTGTATTTGGTAGAGGATACAGTGTCTACTTAAGCATGAGTATTGTTTTTGATGAGAATGTGACAGCCTGTTCAATCTGAATATTTGATATAGCATGGAAGCTATATAAGGTGGGGGCTTGGATCATCATTATTAAATGAATTATCTACCTTTTAAATCAGCTAAATCTTAATATTTCATCAAGGTGCAAAACGTGTTAATTAGCAAttcaatttcaagatatctttttCCGTTTCTAGTGACGCAGTCTGGACATCTCTGGACAACGTTTATTCTTAAATTTGTATATGAATACTGTTTGACTGAAAGGGGTGACGATTTCAGTGGCCCTGAATAATTTTGGGGGTGGGTGATCTGAAATGCACTTTATAGGATCTTTGTGTCAAATTGTATTCCCACAACACTCAACTCTCTCTATTGAAATATcagcaacaagaaaacaatcattcaaaatgaaaacttcTGACGtgtttatatgtaattatagaattcctacattacatttaaacccTGTTATTCCCAGGAACACACGGCTCCTTCCTTGCCAAGGGAGTGTGTCGGGTTTCTGTTGTCAAAATGAACCCGAGGAAGTAAGGATGATTAGGTTTCGGTAATGCTGTAATGTCCGTTTCCACCAAACTGCACCGAGATCAGTTCTGACAGCAGCATGACCTAGCAGCCCGTGATTAAATATACATCCAGAGCTGGTGTAATATATTCCCTTGTGGTGCAGTTCATCTGTGTGCATTGACCCAGGGCACAGCCGTGGCAGTGAACCCTGCCTTTATATTGTGCTACTGCGGAGAAGCTTCTCCAGTTCGTGCTCGATATGTTATTGAGCTTATTGTTGTTCTCATTAAGATCAGGAAGAGCTCTTGCCTGAGAAAAACAGACTAGAGGAAGTCAGACAAAGTCAAGCTAAGGATACAAAATATCGTCTCCCATATCATAAGGAAATACAAATTTAtaagttttggttttgttaactTTTCCAAGAATGTAATGTTGTGTGAAGAACACCAGGGGACGGATTTTGACACCATGTTTTAGAGTCGGatattgtgttgtgtgctcCTCTGGTGTCAGGTGTCTGGTGCCGCACCCCAGACACAGACCCTGATGTTTATAGCTCATCAGATGGGGTCAGAGCATGTCAAGTATGGTCACTGCATGATTACAGTGTGACCGGGCAAGTTCAGTCAATGGGCATGACTTGCAGGGGAAgagttttgaaataaacaaccaaGGAATGCTCTGCTAGATCAGTGTCATTTGGCATTCAATATCTTGCTTATCAAAAGTCAAGTAATGCTGTGTACTCTGAGTCGGGTGTCTTTCCCTTGTGACCTTGTATGGTACGTGTTGTTGGAAACCTGCCAGCACTCTAATCTGTGTGCATCTCCCTGTGCTTGTGCACTTTTCTTTGCAATGAGAACTAAGCTTAGTCACAGTGGTATCTAAGCTTAGCTGGACTAGAACTTGCTTTACCTCCTTCTGCCATGGTGTCATTCAGGTGGTTGGACTTTTTTTTTGCCTCAATCCAAGTTTACGAATCCCTGGCCTTTTTGCAACACTGTATTCTCATGTCTCAGTGACCAGTGTAAAGAAAGCAACGactgttaaaaatgtttcagaagatCTTGTCTTAACAATAAGCAACCGATTAACAAGAATCAAGCTCCTTATTATTGTGTAACTCAGCCTGAAGCCTGATCTCATTAGCTCTCAGATGCTAAGCAGGGTTGGGCCTGGTCACTACCTGGATGAGAATAATTTAAGGGAATCTGTTGGCTGCTTTCTGGAGTTTCATCTACTTTAAAAGCACAGTGATTGGCTTTCCCAGAGTGGGTATTGTGTCCTGTATCCTGGGGTCctacaagagaaaaacaataccCAGAAAACTGTGGTTTAGTGTTGACATTCAGAGGGAGTCCCAAGATTTCAGTTCTGATAAAGCCTCTGTCCACACAGCTATAACCTGAAGAGCACAGGCCCAGATCCCGGCCGTTGAGTTTTGCTTACTGTGTCCAGGAGTTGAAACAATGGTGCTGAACGAGGATCCTTATCTCACTGAACGAACAGCACCTCCTTCTGACCTCTGACTCAAGGATGAGATCATGCTGTGACTGGGGCTGTTGTCCTTCCTTGACTGACTAAGCTTGGCTTTGTCTAATTTGGTATGAAAGACAGAGTCACATGAGGCTCCTACTCCCAGAGAACACCCTGTTTGTCCTTGGTTCGTTAAGGTCACCGGGATATTGCAGTGGTCAGACGGGGAATGTCAATGCAAGTTAAATTCTAAATATATAGCTTGTATATAGACTATAGACAATGTCAGTGAACTTGTGTGACATTGAAATAAGTCTGAGGCTACAGAGATGTTTGAATGGAGATCCTATTCTTGATCGTCATAAGTTTATGTTGACTCTTACGACTAGATGTAATAAATCATTGCATTCTAGTCATTTTCTTGGTCATCCACTCTCCCTCATTTTGACCTTGACATCGAAAccaagtacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagcctataattttaatggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128685 lncRNA downstream 74233 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 229233 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 337490 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 338105 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 338966 3159837 ~ 3160036 (-) True G102888
TU128714 lncRNA upstream 46188 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 276262 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 630625 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 642504 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 644523 4152518 ~ 4152748 (-) True G103095
AMCG00010900 mRNA downstream 3164 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010892 mRNA downstream 15379 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010894 mRNA downstream 35259 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010893 mRNA downstream 48368 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010896 mRNA downstream 80624 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010899 mRNA upstream 6647 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010901 mRNA upstream 45991 3553986 ~ 3574815 (-) True AMCG00010901
AMCG00010902 mRNA upstream 69236 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010904 mRNA upstream 84661 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010909 mRNA upstream 507603 4015598 ~ 4020921 (-) True AMCG00010909
TU128662 other downstream 79826 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 79826 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 171443 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 316383 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 737738 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 661798 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1134657 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1626215 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2196775 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4463629 7971624 ~ 8019522 (-) False G103832

Expression Profile