RNA id: AMCG00010901


Basic Information

Item Value
RNA id AMCG00010901
length 6387
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00010901
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3553986 ~ 3574815 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCTCCAGTGCTTTACGCGTCCGTGTGGCATTTCAAATCAAGCCCTTTCTCAAGCGGCAGTTCGGGTCCGGACGGTTTCGGCCGCGCATACCGGCCCGCTCGGGTGGAGTTGCCCGGTTTACGTCCGACTTGTTAGCCCCGCCCATGAACCGAAACAGACGGGCGTGGGAGCCAATCACAGTCACACATCTAGGAAACCGGCCAATCACAAGTGCCCGGAGGCGGGTCGTCGGCGTAGTTCTGCTTAATGGTTGTGACAGTGCCACTCAGTCACGGATAcgagacattttttttctctcccgaAAAGTGCAGTTAGGATGAGCCCCGGCCCGGCTCTTCTGTGAGAGCAGAGGACCACCTCGCCCAGCCTGCTTGCTCGACGGACCGAGGCAGAGTTTGCCGTGAGCCGCCATGCCGCTGGTCACCAGAAACATCGAGCCCCGGCACCTCTGCCGCCAGACCCTGCCCAACACCATCAGGAATGAGCTGGAGTGCGTCACCAACATCACCCTGTCCAACATCATCCGCCAGCTGGGCAGCCTCAGTAAATATGCAGAGGATATCTTTGGGGAGCTGTTCCTGCAGGCCAGCGTCTTCGCCGTGCGCGTCAACACCCTGGGAGAGAGGATCGACAAGCTGCAGCTGGCCCCAGGTGCTCACCCTCCCTCTCCGTCTGTCTCTGCAGTGTCTTTGCAGGCCATCACCACCAGGAAGGCGTTCAGGAGCAACCTGACTCAAGACCAGCAGCTGTTCAAGAGGAGCTCCCTGCCCATGCCCATCCATGAGACCTACAGCCTCTGCTTCGCGCCCCCCCCCCTCAACAACCTCAGCATGTACAGAGATGACGGGAAGGAGGCCCTCAAGTTCTACACTGACCCCTCGTACTTCTTCGACCTGTGGAAGGAGAAGATGCTCCAGGACACCAAGGACATCATGAAGGAGAAGCGCAAACACAGGaaagagaaagacaagaACCCCAACCGCAGCAACCTGAACCCCCGCAAGATCAAGACCCGGAAGGAGGAATGGGAGCGGATGAAGATGGGGCTGGAGTTCGTGACGCCCAAGAACGACGCTCTAAACTCCAATGAGATGCTGAACGGGAGCATCAGCTCCGGGGATGGGATGGGAACCGAAGGCTACCTGGACCAGAGCCACGGATCGTACTCGGGGCCGTTCGACCCTTCCTCGCCCCTGTCCCCCAGCCCCGATGACATGCTGCCGCCGCCGCCCCCTGACATGTACGGCGATGCCCAGAGGAGTACCGGCGGCCCGAAGCGCATCAGCATGTGGCCCCGGCGGCTTCCCCGCCCCGCCCGTCCCGccacctcctccctccctgGATGCCACCGGCTCCATGCCAGCCTCACAGCCGCCGGGCGGgccgccccctcccccaccgCCGCCACCCCCGCCCggaccccctccccccagctcGGGCCCGCCTCCGCCTCCGCCCCCATCGGGCGCCACACCCAAGGTTTCAACCTGCGCAAAGTGGAGGAGCAGCGCGAGCAGGAGAAGCGCGACCACATGGGCAACGACGTGGCAGCCATCCTGTCGCGCCGCATCGCTGTGGAGTGCAGCGACTCGGAGGACGACTCGTCCGAGTTCGATGAAGAAGAGTGGTCCGACTAACCTGCTCCTCTTCCTCGCCGCACAGATGCTTAGGTCTTGCCCTCTTCCCCTCCCCTTCTCCTGTCCCCATGACTCCAGACTTCAGGCTCAGATCAGGGCTTCGCTGTAGAGCGGCACGACTAGACCTTCGCTCGAGGGCCCGGCGTGCTGGTGGGAGAGGGAGGCATAAGTCACGGAGGCGGGGTTAAAGATCTTGCCAGATGAGAGCTTTTGTCATTGTATCAGAAATTTGGACGAATAACTCGACCCCAACCCGCGTTCACTCATTCTCTACAGCGCCGTTCGGAGTCTTTACCCGTCTGTCTCGTGAAAGTGGCGGgtgtcttaaaaacaaacaagtgaaatCACCCTGCCAGTGGTGCAGTAGTGCATGAAGAACTAGAAATAAAACCTCTGAGATAGGTCAAAAACCGATCCAAACAAAGCAGCGAGTGACTCAGATCTCTCAAACTGCAGTTCTGCCATCGCTCTCTTGACTCGCGTCATCGGCACTCATGCAAGCCTGAAACCGGGCCACTTTATGAAAAAccgaataaataaaaatatatgaaaggGTTTGAGTGGCTTGCACAGACATGGCACTTAGCTATTAATAGTGCTCTATTTACAGTGGAGTTAAAAATCTTTAATCATGTGTTGCCACATGAAAAgacactctttttttttttgtgtgtctttgtgtaacGTATACCTTCCAGTGATTTCTCTAGCGGCAGACTGCTAGATGTGGTGGGTGTCGAGTTGAAGCCATTGAAACGTAATGGGCCTGTGGACGCGATGCTATGACTGTACACAACCACGATCATGTGACAGTCCTGTTCTCCTCATACCCGAGCCTCCTGACTTATCCCTTCCTCCCTTTAGATGGCAATCCAAGATATTCAGATTTGTGGGCCAAGCAACCTTATGTTCCTGTACTGTGAGCTTGCTGTACTGAAACCACTGAGAACTGAGGGTTTAGTTCAAACCGGTGGGTCAACACGTagatgtgaaatgtgttttgcaatGTCAAGATCTGTGGAAGAGCTTCAGCGCAAGATCTGAGATTAAAAACGGTCTGTGCAGGGATTGTTTAAATCCAAAATAACTTGTCGCTCTTGGTGCTTTGCATGCAGTACGTAAATAATATCTGACCACTCCCTCTCTTTCCACTCTGCCTGTGAGTGACCAGAGATATTGGCAGTACAGTGGATTCAATATGCTGTTTATGGATCATTTCTGCTCCTTCTGTTATAGTTTTCTGATCAGCTCGATTACAGCACAGCGCTGATACCTGATATGTATTTCTCACTGAACATTGCATTCAGCTACTTGGCTACAATGTTGCTGTTTGTAGAAACCAAAAGAGAACTTCCATCagccttgatttatttattttaagttcagGTGTATGTATGAATTCTTTCTGGCGGTGGCGAGTTGTCCAACTGGAGAATTCAGTGTTTGTGCCGGCCTTCCCTCCCCTCCATATTCATTATTCACCAGCCTCCGTGTGAAGGAATATGAAATGCACCAGCCTTGTTCTCCTCCGGCTCTCAGGACCGgctctgctctgtgtgctgaCAGCCTCCCTCTGGCAGGATCCTGTTTCAGATAGTTGTTCCATGAAATATTCATTGGTTGTTCATGGCCTTCTTCTTGCATCTAAACAGCTGCCTAGAACAGGAACCGCGCTGATGGCGTTCGCATCCTGTGGGGATTGTGTAGCTGTAGCGTTGTGCGTCTGTCGACTCTCTTCTGTCTATCCGAGGCCATTGTATATAAGACTCGTATCAAGGATTCATTCTCCAGTCTGTGAAGTAAAATGAATAGCCCTCGGGACTGTCATGTATGTCTGACCAACAGGAGGGGACATTCTCTGAGAGACCAATTGCCTTACCCTGATGATCAGTGTGcagatgtttttcttgtgtttttccatCATGCAGTAGTATCAAAATGACCATTGTTAGTTTTTCCCGTTACGAccaatattgatttatattgtgtgGCTCTTgaatcattaaaatgaattagttttctattttatatcCATTTAAAATTTAGTTTAATTCGTGACATCCCTGTGCAAAGGGATGGTTTGAAGCAAAACGACAACTACAGAGGAGCAGTAGATGTAGTGTTTTAAAGGGATGGGGGATTGGTTTTTGCCATAGTGTGAAATTGcacttgtattatttgtgtaaattgtgcCTTAGACTTGGGTGTCAGTGCTCAGTGCCTGGGAAGCTCGGGGTTTGGGGATCGTTGGCAGCAGAAAGCTTTGCATGAGTGTAGTTGGTGTCAGAAACTAGGAAATGCCTGCATATTGTAAATGGCGTTTCTGACGGCAAATTGACATTTTTCTAGTTTCTATCCATTCTAGtaagtgtttttaatatgaGGGAGGCCCACTACCTCTCCACTACCCCCACTTATGATTGCTGGATGTCCCCCACGCAGATGCACCTAAAGGTCCAATGCTTCTTCCATTGGCCAGATtccagacaaataaataaataataaactgatcaagtaaactgaaaaacaacctCTTCACTTGCTTGGTGCCAAGTGCTCTGTTAAAGTGGTGGAGGATAAAGTATTTATAGAGCATTCACTAGTTAAGGAGAAAATctcataattaattttaaattaaattaatttctcatCAGCTGACTCCCCCTGGGCTGGAGTATTTGAACAGTAATCTGGACGTGCCAAGATCTTTTTGTTATCCGATATTCAAAACTCTATTCTGAGCTCTTGGCTTCTGCTTCTTTAATCTGTCTTCCTCTTTCTAATTTGCTACTTATTTCAGAGCTGTTCAGTGTGATGAAAATGGTTAGAGAATTAAAAGCACAAAGGTTAATTTCTGGTATAGCTCTACTGTTGccaattctgtttttttctttttataaatctTCTGTCAGTTCAATGCCGCAGGTACCACAGCAAAATCGTGCGTCTGCCAGCAACTCACACCCTGACCTCCTCGCTTCCCAAAAAGCAACAAGACCAAATGTGACAGAAAACCCTGTACTATTTAACCAAAGTATATCTCTTTACATCtattttttactgtaatatttttttcatagtaatcatatatatatgcatccATCTATGTTGCAATGGGCTTTATGGTTTGACTTCTAGAGAAAAGTGCATTTCTCTATAGTCCAAGGTTGATTTTTATAGTGCCATGCCATCCTTTGCAGTTTATATCATGGTGTGGTAAATGCAATGCCTGTAACCAGactgaactattttaaatgAGGGATATGACATCATGGAAGCATTCAAGCAATGGGGttctgggggggaaaaaatgctttaagtTGAATTGAAAGTCAAGTCCCTTTTCAGTTATCTTTTTTCCAGTTAaatgctgtctgtctgtaatGCTCAGGATGCGTTAGTCTGTGTTCAGAACGCTGTTCCTTACCGAACCCAAACCATACTGCACATCCATTTCcaatagctgtttttttttcccttttaattagGCATGTCCCAGTCCAGCCCTTGAGATCAACTGTGCTGCAAGATTAAGCAAGAAAGAAAGCCTGAATAGATAGGTTATTCCACATTTGCACCTAGAACAACCTTTATTCAGAGGGTTTAATTCTGTGTAGATCTAAACGGAGGGTGGATTCCTGTTTCGATCACAATGAGTAGATCGAGAATTCGGTCTTCTGTGATGCCAGGGCGTTGGTGGCCGAGATGCTTCTGGTCTCTTGCAAGCTTTTCACTTAAAACACTTGGATCAGCTTGACTTGTCCACGTGTCATTTTCAGTGATGCATTTTACCTATGTGTGCAGCCTTTCTGTGGGGGAAGGGACTGGAAACGCACCATCTCTGACTAGGCGTAGATTAAAGGTAGAGCGTCTGGATGGCTCTCCAATGAAGATCAGATGGAAAGAGTTCCTAAACGTCCTGCCGTTCTCAAGGACTAGGATTGGCTGCCTCTTTGCCTCCCTCCAACGTAACTGCAGTTTGAAATGCAACCTTAcaatgtggttttgtttttgtgttttattttatcagtttatatataaaaacaagtgcCTTCCTTGATTCTGGATGCCTGCTTTAATGTAGTCCACCATTATGGACGGTGTCTGCAGAACggtataattagttttttttgtaggtGTTTTGTAGGCAAAATCAAAAGTAGTTCACTAATAAAACCATAAAGCCCACTACTTTATTTGCTATTGATGCCTTGCCTGAATATATTAGTGCCttttatgtataatttttgTTATTGGAGATCTatgcaaaataaagtaataagcaatatgcatgtatataataCATCCATGTTGCAACCATggagttttattttgaattaatgtaataatggaTTAGTCTTTTTATGGGGGGgcattttttgtaatgaaatgtcAGTTATCTTGATTTCTAATTGTAATATATGCAAATTGTATATGTACTCTCACTGTATGTAAACTTGCAAAGTGGCTAGGAAGAAACaatgctaaaatgaaaaatgcagggCTAGTTACCTGGGTTAATCTTCTTGTCTTGAGTAAAATCATTGACCAATTGTTGCCTCTGAGTCTGACTGTGTTCAAGTTCATGCCGTCTCTGCAATCCTGGCTCTCGCTTAACACACTGGCTGTGTTTCACCGTAGAGGCTGATAACCATACATTGTCTGAGGATAGACTCCCTCGCAAACCCCACCTGGCCTCTTACTTAGTGGGAGAGTGATCTACTGTCAGGCTGGGATACATCCTTC

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05748 WASF2; WAS protein family, member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128685 lncRNA downstream 129217 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 284217 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 392474 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 393089 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 393950 3159837 ~ 3160036 (-) True G102888
TU128741 lncRNA upstream 209442 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 563805 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 575684 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 577703 4152518 ~ 4152748 (-) True G103095
TU128853 lncRNA upstream 850539 4425354 ~ 4425572 (-) True G103149
AMCG00010899 mRNA downstream 29409 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010898 mRNA downstream 45991 3499002 ~ 3507995 (-) True AMCG00010898
AMCG00010900 mRNA downstream 58148 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010892 mRNA downstream 70363 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010894 mRNA downstream 90243 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010902 mRNA upstream 2416 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010904 mRNA upstream 17841 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010909 mRNA upstream 440783 4015598 ~ 4020921 (-) True AMCG00010909
AMCG00010910 mRNA upstream 453987 4028802 ~ 4058729 (-) True AMCG00010910
AMCG00010914 mRNA upstream 580216 4155031 ~ 4167037 (-) True AMCG00010914
TU128662 other downstream 134810 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 134810 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 226427 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 371367 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 792722 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 594978 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1067837 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1559395 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2129955 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4396809 7971624 ~ 8019522 (-) False G103832

Expression Profile