RNA id: TU128714


Basic Information

Item Value
RNA id TU128714
length 4833
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00010901
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3553986 ~ 3574815 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCggaccccctccccccagctcGGGCCCGCCTCCGCCTCCGCCCCCATCGGGCGCCACACCCAAGGTGCAGGCGGAGGAGCCGGCCAACGACGCCCGCAGCGACCTGTTGCAGGCCATCCGACAAGGTTTCAACCTGCGCAAAGTGGAGGAGCAGCGCGAGCAGGAGAAGCGCGACCACATGGGCAACGACGTGGCAGCCATCCTGTCGCGCCGCATCGCTGTGGAGTGCAGCGACTCGGAGGACGACTCGTCCGAGTTCGATGAAGAAGAGTGGTCCGACTAACCTGCTCCTCTTCCTCGCCGCACAGATGCTTAGGTCTTGCCCTCTTCCCCTCCCCTTCTCCTGTCCCCATGACTCCAGACTTCAGGCTCAGATCAGGGCTTCGCTGTAGAGCGGCACGACTAGACCTTCGCTCGAGGGCCCGGCGTGCTGGTGGGAGAGGGAGGCATAAGTCACGGAGGCGGGGTTAAAGATCTTGCCAGATGAGAGCTTTTGTCATTGTATCAGAAATTTGGACGAATAACTCGACCCCAACCCGCGTTCACTCATTCTCTACAGCGCCGTTCGGAGTCTTTACCCGTCTGTCTCGTGAAAGTGGCGGgtgtcttaaaaacaaacaagtgaaatCACCCTGCCAGTGGTGCAGTAGTGCATGAAGAACTAGAAATAAAACCTCTGAGATAGGTCAAAAACCGATCCAAACAAAGCAGCGAGTGACTCAGATCTCTCAAACTGCAGTTCTGCCATCGCTCTCTTGACTCGCGTCATCGGCACTCATGCAAGCCTGAAACCGGGCCACTTTATGAAAAAccgaataaataaaaatatatgaaaggGTTTGAGTGGCTTGCACAGACATGGCACTTAGCTATTAATAGTGCTCTATTTACAGTGGAGTTAAAAATCTTTAATCATGTGTTGCCACATGAAAAgacactctttttttttttgtgtgtctttgtgtaacGTATACCTTCCAGTGATTTCTCTAGCGGCAGACTGCTAGATGTGGTGGGTGTCGAGTTGAAGCCATTGAAACGTAATGGGCCTGTGGACGCGATGCTATGACTGTACACAACCACGATCATGTGACAGTCCTGTTCTCCTCATACCCGAGCCTCCTGACTTATCCCTTCCTCCCTTTAGATGGCAATCCAAGATATTCAGATTTGTGGGCCAAGCAACCTTATGTTCCTGTACTGTGAGCTTGCTGTACTGAAACCACTGAGAACTGAGGGTTTAGTTCAAACCGGTGGGTCAACACGTagatgtgaaatgtgttttgcaatGTCAAGATCTGTGGAAGAGCTTCAGCGCAAGATCTGAGATTAAAAACGGTCTGTGCAGGGATTGTTTAAATCCAAAATAACTTGTCGCTCTTGGTGCTTTGCATGCAGTACGTAAATAATATCTGACCACTCCCTCTCTTTCCACTCTGCCTGTGAGTGACCAGAGATATTGGCAGTACAGTGGATTCAATATGCTGTTTATGGATCATTTCTGCTCCTTCTGTTATAGTTTTCTGATCAGCTCGATTACAGCACAGCGCTGATACCTGATATGTATTTCTCACTGAACATTGCATTCAGCTACTTGGCTACAATGTTGCTGTTTGTAGAAACCAAAAGAGAACTTCCATCagccttgatttatttattttaagttcagGTGTATGTATGAATTCTTTCTGGCGGTGGCGAGTTGTCCAACTGGAGAATTCAGTGTTTGTGCCGGCCTTCCCTCCCCTCCATATTCATTATTCACCAGCCTCCGTGTGAAGGAATATGAAATGCACCAGCCTTGTTCTCCTCCGGCTCTCAGGACCGgctctgctctgtgtgctgaCAGCCTCCCTCTGGCAGGATCCTGTTTCAGATAGTTGTTCCATGAAATATTCATTGGTTGTTCATGGCCTTCTTCTTGCATCTAAACAGCTGCCTAGAACAGGAACCGCGCTGATGGCGTTCGCATCCTGTGGGGATTGTGTAGCTGTAGCGTTGTGCGTCTGTCGACTCTCTTCTGTCTATCCGAGGCCATTGTATATAAGACTCGTATCAAGGATTCATTCTCCAGTCTGTGAAGTAAAATGAATAGCCCTCGGGACTGTCATGTATGTCTGACCAACAGGAGGGGACATTCTCTGAGAGACCAATTGCCTTACCCTGATGATCAGTGTGcagatgtttttcttgtgtttttccatCATGCAGTAGTATCAAAATGACCATTGTTAGTTTTTCCCGTTACGAccaatattgatttatattgtgtgGCTCTTgaatcattaaaatgaattagttttctattttatatcCATTTAAAATTTAGTTTAATTCGTGACATCCCTGTGCAAAGGGATGGTTTGAAGCAAAACGACAACTACAGAGGAGCAGTAGATGTAGTGTTTTAAAGGGATGGGGGATTGGTTTTTGCCATAGTGTGAAATTGcacttgtattatttgtgtaaattgtgcCTTAGACTTGGGTGTCAGTGCTCAGTGCCTGGGAAGCTCGGGGTTTGGGGATCGTTGGCAGCAGAAAGCTTTGCATGAGTGTAGTTGGTGTCAGAAACTAGGAAATGCCTGCATATTGTAAATGGCGTTTCTGACGGCAAATTGACATTTTTCTAGTTTCTATCCATTCTAGtaagtgtttttaatatgaGGGAGGCCCACTACCTCTCCACTACCCCCACTTATGATTGCTGGATGTCCCCCACGCAGATGCACCTAAAGGTCCAATGCTTCTTCCATTGGCCAGATtccagacaaataaataaataataaactgatcaagtaaactgaaaaacaacctCTTCACTTGCTTGGTGCCAAGTGCTCTGTTAAAGTGGTGGAGGATAAAGTATTTATAGAGCATTCACTAGTTAAGGAGAAAATctcataattaattttaaattaaattaatttctcatCAGCTGACTCCCCCTGGGCTGGAGTATTTGAACAGTAATCTGGACGTGCCAAGATCTTTTTGTTATCCGATATTCAAAACTCTATTCTGAGCTCTTGGCTTCTGCTTCTTTAATCTGTCTTCCTCTTTCTAATTTGCTACTTATTTCAGAGCTGTTCAGTGTGATGAAAATGGTTAGAGAATTAAAAGCACAAAGGTTAATTTCTGGTATAGCTCTACTGTTGccaattctgtttttttctttttataaatctTCTGTCAGTTCAATGCCGCAGGTACCACAGCAAAATCGTGCGTCTGCCAGCAACTCACACCCTGACCTCCTCGCTTCCCAAAAAGCAACAAGACCAAATGTGACAGAAAACCCTGTACTATTTAACCAAAGTATATCTCTTTACATCtattttttactgtaatatttttttcatagtaatcatatatatatgcatccATCTATGTTGCAATGGGCTTTATGGTTTGACTTCTAGAGAAAAGTGCATTTCTCTATAGTCCAAGGTTGATTTTTATAGTGCCATGCCATCCTTTGCAGTTTATATCATGGTGTGGTAAATGCAATGCCTGTAACCAGactgaactattttaaatgAGGGATATGACATCATGGAAGCATTCAAGCAATGGGGttctgggggggaaaaaatgctttaagtTGAATTGAAAGTCAAGTCCCTTTTCAGTTATCTTTTTTCCAGTTAaatgctgtctgtctgtaatGCTCAGGATGCGTTAGTCTGTGTTCAGAACGCTGTTCCTTACCGAACCCAAACCATACTGCACATCCATTTCcaatagctgtttttttttcccttttaattagGCATGTCCCAGTCCAGCCCTTGAGATCAACTGTGCTGCAAGATTAAGCAAGAAAGAAAGCCTGAATAGATAGGTTATTCCACATTTGCACCTAGAACAACCTTTATTCAGAGGGTTTAATTCTGTGTAGATCTAAACGGAGGGTGGATTCCTGTTTCGATCACAATGAGTAGATCGAGAATTCGGTCTTCTGTGATGCCAGGGCGTTGGTGGCCGAGATGCTTCTGGTCTCTTGCAAGCTTTTCACTTAAAACACTTGGATCAGCTTGACTTGTCCACGTGTCATTTTCAGTGATGCATTTTACCTATGTGTGCAGCCTTTCTGTGGGGGAAGGGACTGGAAACGCACCATCTCTGACTAGGCGTAGATTAAAGGTAGAGCGTCTGGATGGCTCTCCAATGAAGATCAGATGGAAAGAGTTCCTAAACGTCCTGCCGTTCTCAAGGACTAGGATTGGCTGCCTCTTTGCCTCCCTCCAACGTAACTGCAGTTTGAAATGCAACCTTAcaatgtggttttgtttttgtgttttattttatcagtttatatataaaaacaagtgcCTTCCTTGATTCTGGATGCCTGCTTTAATGTAGTCCACCATTATGGACGGTGTCTGCAGAACggtataattagttttttttgtaggtGTTTTGTAGGCAAAATCAAAAGTAGTTCACTAATAAAACCATAAAGCCCACTACTTTATTTGCTATTGATGCCTTGCCTGAATATATTAGTGCCttttatgtataatttttgTTATTGGAGATCTatgcaaaataaagtaataagcaatatgcatgtatataataCATCCATGTTGCAACCATggagttttattttgaattaatgtaataatggaTTAGTCTTTTTATGGGGGGgcattttttgtaatgaaatgtcAGTTATCTTGATTTCTAATTGTAATATATGCAAATTGTATATGTACTCTCACTGTATGTAAACTTGCAAAGTGGCTAGGAAGAAACaatgctaaaatgaaaaatgcagggCTAGTTACCTGGGTTAATCTTCTTGTCTTGAGTAAAATCATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128685 lncRNA downstream 129414 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 284414 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 392671 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 393286 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 394147 3159837 ~ 3160036 (-) True G102888
TU128741 lncRNA upstream 224864 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 579227 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 591106 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 593125 4152518 ~ 4152748 (-) True G103095
TU128853 lncRNA upstream 865961 4425354 ~ 4425572 (-) True G103149
AMCG00010899 mRNA downstream 29606 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010898 mRNA downstream 46188 3499002 ~ 3507995 (-) True AMCG00010898
AMCG00010900 mRNA downstream 58345 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010892 mRNA downstream 70560 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010894 mRNA downstream 90440 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010902 mRNA upstream 17838 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010904 mRNA upstream 33263 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010909 mRNA upstream 456205 4015598 ~ 4020921 (-) True AMCG00010909
AMCG00010910 mRNA upstream 469409 4028802 ~ 4058729 (-) True AMCG00010910
AMCG00010914 mRNA upstream 595638 4155031 ~ 4167037 (-) True AMCG00010914
TU128662 other downstream 135007 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 135007 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 226624 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 371564 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 792919 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 610400 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1083259 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1574817 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2145377 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4412231 7971624 ~ 8019522 (-) False G103832

Expression Profile