RNA id: AMCG00010903


Basic Information

Item Value
RNA id AMCG00010903
length 1389
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00010903
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3670455 ~ 3677090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTCTTGTCTGAGTCTGTTCAGGTGCAGGTTTTCATCAGTATCTCCGAGCTCTCATGCAAAGACCAGGAAGTGTTCTGGCAGGGCTCGGTGCGATACCACACCCACCAGAAGGATGGCATTCTGGTGTGTGCCGATTTCTTCTCCGGACACTGCCATCTGGGGGTGCTGTGCCCCCGACACCACACGCGCCGCCCCTATCACTGGCAGATCAGACACTCCAAGTCCAAGCAGTGGATGAGCATCTCTGACTCGGCCCAGGAGCAGCTAGAGGCCCTGTACTGCAACCCTGACCACGACCAGGTCAAGGTGAAGGAAAGATCTGATGCCACAGACACGTATCAAGTGGATTTCCAGAGTATGACGACGACAAAGGGCTGGACCTACGACCGAGTGCGCAGACTGGCCACCACGACCGACCCAGACTTGGGTTTCAGTTTCCACACCGAGTGGTTTATCTTTTGGAAGGAGGGGACGTCCTGGCAGAAATACGACGAGCCAATAGCCAGCCAGTTAGAGGGTGCATTTGAGAAGGGCATGTGGAACgaagctttcattttaaatggaaatatctaCAATGTTTACTTGAAAAATTTCACACAGTGCAATGTAGCAACGGGCTACAGTAGAAGTATCCGCCGAAGACCGTGCTTCCTATCGGACCTGCGCCTCACGGAGAATTTGCAGAGAGTAAATCACGTAGAGCAGGGGACGTCCTCAGCTTTTTCAGAGAATCCGTTGTCCCGTATCTTCAGCAACTATCCCCTGACTTGGGTTCCTGACCTGCCAAACACGGAGTGTTTTGCCAAGATCCCGGTGCCGGCGACCAGCGAGGCTTACCTGCATGTTCACAGGCTTCTGCACCAGACTTTACCTGAAACTGACGTCTATATCATTGCCATCGACCAGATACAGAACGAATGGCTCTGGAGTAAATACAAGGCacaGAGAGAGTTCATGTCATGGCGGTCGGGCGCCGAGGGAGACTCTGCTGTCAATGAGATGCATCTCTTCCACGGCACGACGGCGAATGTGGTGGAAGAGATCTGCAAAATGAACTTTGACCCTCGTCTCTGGGGCACCAAGCATGGCCACGTGTATGGCCAAGGTACGTACTTCGCGAAGGACGCCAGCTGCTCCGCTAGATACATTCCCCAGGGGGCTGGGGAAGAGCACATGTTCCTCAGCAAAGTCCTTGTGGGCAAATCAACGCTAGGGAATAGAGCGCTACGCCGGCCTCCGCCTCTTCCCTCCGGAGATCTGTACGACTCCTGCGTGGACAACGAAGCGCAGCCCAAGATATTTGTCATTTTCGACAACAGCCAGTGCTACCCCTACTTCCTCATTCGCTACAAGCGAAGGACGGGCAGCATCAGCGTGTTTTAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128721 lncRNA upstream 77048 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 207952 3459862 ~ 3462503 (+) True G102959
TU128615 lncRNA upstream 212798 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 237308 3432815 ~ 3433147 (+) True G102944
TU128476 lncRNA upstream 540191 3093934 ~ 3130264 (+) True G102859
TU128775 lncRNA downstream 372848 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 610933 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 760787 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 859247 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA downstream 859247 4536337 ~ 4594648 (+) False G103152
AMCG00010897 mRNA upstream 120004 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010887 mRNA upstream 230946 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010888 mRNA upstream 243424 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010890 mRNA upstream 272563 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010889 mRNA upstream 284098 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010905 mRNA downstream 154224 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010907 mRNA downstream 212873 3889963 ~ 3893566 (+) True AMCG00010907
AMCG00010906 mRNA downstream 239199 3916289 ~ 3946921 (+) True AMCG00010906
AMCG00010908 mRNA downstream 343971 4021061 ~ 4024002 (+) True AMCG00010908
AMCG00010913 mRNA downstream 461577 4138667 ~ 4150872 (+) True AMCG00010913
TU128716 other upstream 90178 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 226921 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 242026 3426499 ~ 3428429 (+) False AMCG00010888
TU128578 other upstream 271949 3363267 ~ 3398506 (+) True G102921
TU128774 other downstream 372848 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 961342 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2964893 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 3240676 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 4871273 8548363 ~ 8552605 (+) True G103939

Expression Profile