RNA id: AMCG00010904


Basic Information

Item Value
RNA id AMCG00010904
length 6508
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00010904
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3592656 ~ 3611545 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCCGGCTGGGCTCGTGTTACAGCAGTGTCTGTCGGTAGAGGAGTCCACCTCGGGGAGGAGATGGGGGGCTGCAGTAATTGGTTCACATCTACAGAGAAGGGGTCAGTCCGGCTCTTTTAATGAGGAACATGTGAGCGCGGGGGGGAGGCAGCGGGGTGTGGAGCGAGTTAGGGGGGGTTGCTACAGTTGGTCTCCAGTGTGGTTCGCTTGCGTGACCTGGAACAGAATCAACTTTCAGAAAAACTtccagacaggcaggcaggcagacagaccgGCAGGCAGCCACGGGGAACGGCCCTCGAAATCCACCCAGAGTCGCTGCGAACCGAAAAGAAATCGGCGCCAGCGTCTCGGTGTCGACCCAAGTAGACTACAGACCGCATCTTTCACTCGCATTCGAACCAAGCGCTACTCGACAGGCTTGACAACAAAGCTGAGGGGCCACAGGAATCACACACTGGAGCTCAGAATGCGGATTGATGTTGAGTTTGAAGAGCTCGGCCGCTGCGATCGCCGTTCTTGTTCCAACTCTGATCTCATCCCTCGTAGTGAGGGGACCGATGATTGCCCTCGTGAGAACGCGGTGTCACAACATCTGTCCCGGAatGCCAGCTGCCGGCCACTCCAGGGCAGTGTTGTGGAGAACGGGGGCTGTGAGCCGGAGGCGCCCCCCGCGCTGTGCCAGGGCCCCCGTGCCTTCCTGCAGGGCAGCAGCGTGAGAGCCCACGAAGCGCTTAGCATCAGGGCCCCCCAGCGCAGAGAGCCAGGCGCCAACAGCAAGCACCCCCGCGCCAGGGAAGTCAAGTGCAATGGCAGTGAAAGCACAGGAGAAGATTCCTGTGTCAGCCTTCTAGACTCGCCAGTGATTAAGAGGGAGCACAAGCAGCCGACCCGACCCTGCTCTCCCCTCCCCAGCCTGGCCCCGAGCGCCGAGGGGGGCCGCAACTCCATTGAGCCGCCAAAGACTCCCGAGCTCGCCTGCCAGGGGAACGGCGACAGCCAGCTCAACGTGCTGCCCCAGGACGGGCCCGACGGGGAGCCTACGGGGGACCGCCTGGTTTCTCTGACCTGCACTCCACAGGGGGCCACTCCCGGCAACCCTGACACCCCTCAGAGGACAGGGGCCACCTGCTCCCTGGCTTGcttggaggagaaggagcaAGAGGCGACACAGGCCTTCAAACGCTTCCCCAGTGCCACCTTGCTCTCGCCCGGCAGGGGCAACAATATCGACGGTATCCTAACTTTGCTCCGCGCCAAGTGCGGCAACGGCAGGATCAACCTGTGCCCCGTGGTGCAGCTGAGTGACATCACTAAGGACATGAGCCGGCTCTCTGGGCGCCTGCGGTCCAGTGGGGTGCGGGTGGGCTGCGGTGCCTTGAGCGAGGACGACTGCATGGAGCTGGAGGGCCAGGGAGGCTGGGGGGAGAGCCCCGGGGCCGTGACCGGAGCCTCCCTCCACTACAGCTTCTTCTCCGCGCCCTCCTTGGCCAACGGACTATGCAGCCCAGGGGAGCGAATCCACAAGAGGCCCAAGATTGGACCAAGGCGGCGCAGACAGCCCGAGTCTAGGCCCATGGAGCAAACAGAACCCCAGCAGCAGCATTCAGAGCCAGGGTTAAAAATGGATCTTAACGAGGATGCACCAGCAGATCCCCTCGCAGACATACCGGACCAGCCCATTCCAGCCTGCCCTTTCAGCGAGACTGCAGCCCCTCTGGAGCCCCCGCCGTGTGAAGCCGACCCGGCTACCAACCAGCAGATCATCCCAGAATGCCTTCCCATCACGGccacaaacacagcagctcCCATCCCCACTGCCCAGGGAAACGCCGCGGCCGAGAAACAGAGTGCAGACTTCCGGCAGCAGCCCCCCATTCGTAGGGAGAGTCCGCTGGCTGGGACCCCTCCTGAGAGCGAGAGGAAGTACGCCCTGAGGAGCTCGGGGCGGCCCAGGTTTCCTTGCCATCTTAGAAAGTCATCCCGGCTGCGACGGGTGCTGGAAGATGACCCAAAGGAAGAAAAGCAAAGTTTCGACAAAGAGGACGCATCACTGGATGACTCCAGAGAGAAAGCAGTGGTGGAGAAAGCCTGGAAGAGCGAACGAATGATGGAGTCATTAGAGGAGAGGTGTGGTGAACAGGATGATCTTCAAGGCTTCAGTGAGACATCCCCTGGGTCTTACTCCACCTATAGGAAGGAGACTGAAATGGCTGCAACCCCGACCCGCGGCAAGCGGAAAGGGAAGTGTGTCGGCATCCGTAAGTTTGTGGTGAAAGTGGCTCGCATACCTGTCCACATGAGTCGACGTCACAAGAGCTACAAGATCTCCTCCATGGAGAGTCCAGCTGTGCAGGATGGGACCGGGGGGGGAGAGGAAGGCGAGGGAGTAAAGGGGCCACTGCGAGAGCCCACCGCTCTGCTGAAGATGAAGAACAATGGCAAGAATGTGATGGTGATGTTTCCACCCGGGGAGCTTCCAGTCATCCTAAAGAGGAGGCGAGGGCGGCCCCCCAAGCAGATCCCGCCTGGCCAGCCAGACCCTCGAGAGGTCAAGGCTGGAGAGGCAAAGAAACCTCGCCGCCGCCGGAGAGTGAAGCTGCCTTCCCCACAGCCATCCTATGTGGGGGACACCAATGATGCCAAAAGTGAATACGGAGATGTTCTTTCCAAGCTTGCCTTCCTCAACCGCCAGCCCCCAACCACTGGCCGATGTTCCCCCCCTCGCTGCTGGACCCCCAGTGACCCAGAGACCCTCCAGCAGCCACCCGAGAACCCCAGTATCTCCACCCTGCTGCACAGGCTCCAAGGCTTCAGGAGAAGGGGCGGCCGGGCTGGCTGCATGGGTGGGAGAGGTGGCCTCGCCGGCTCTGCTGAATCCTTCAAAAGGTCGTTCAGTGACTTCTTTGAGACCATtgggaagaaaaggaaagccCCACCGACAGACCCCAATCATCCCCGCAAACGGGGAAAGCAGGCCGCAGCTGACATGTCCAATGCCCCGCCTGGAGAGAAGGTGGTTCGTAAGAGGCGCCCTCGTAAGAATGGCGTCTTAAAGGCAGGGCAGGCACAGCAAGATCAAGACTGGTCTTGCGAGAAAAGCTGGACCGGAAAAGCGGATGGAAGGGTCAGCCAATCCGAACGGGGCCTGGGCTACCAAGGGTCTAACTCTCCCCGAGGGTTTGGAGCCTGTGATCCTGGGAAGAGTGTCTTCTACTCCGCCCAAAACCAGAGTAACCAGGAGTCACAGGGACTCTTTGCTGGCTATTTCCGCTCCCTTCTGGATTCAGACGATTCTTCTGATCTCCTGGATTTCTCCCTTTCCAACCAAGCAGGCAGCCGCGGTGAGTCCCGAAAGACTGCAGGCTGCTACGAATCCGGAAGCCCTGCACCCAACCAGCGTTGGTCCCCTGCCTTCCCTAAAAGGTGCCCCAAAGCCAGCCCATCAAGCAACGAGGGGGCATCTCAGTCTGCCAATCCCCCCAGACCTACTTACCCACAAGGCAGCGGCTATAGCCTCTCGCAGACATCTCCCACTTCCTTTCAGAAAGCTGTcccccctctctcgctctcccggTCCCCCAGCTCCCCTCACCCATCTGGCAGTTACCCACAGTATTCCGCCTACGGAAGTGGCTCCCAGGCCGGCAATAGTGCCGCCAGCACTGCCCTCCAGCCACACAAGCAGTACGAAGGGCAGAGGCTGAGCGACTGCAGCTTCTCCTATGGAGGAGGCAGCAGTAAGACGGCATCGGCGTCCCCCAGCAGCCACTGCAGCATGGGTTACGCCAGCCTCCAGACATCAAACACGCTAGGAAAGCGGGGATATGGATTCCCGAGCTCAGTGCACTCTGCTGTCGCCTCTCTGCGAGGAGACGGTCACATGGGAGCAGCTTCTCCGGGGGTTTTCATGACGACAAAGAACAGCCCCTTCCCTTCTTCTCAAGAGAGCTGCCGGCAGTACTCCGCAGCCCCCCACTGGAACTATAGACCCAATTACCAAGGTGGTGGCTGGAACACAGACATGTACGGTCAGCAGTATCCCGGCTCCTTCGACTATAACACTACCGGCGAACCCAAGGATATCTTAGACATCTCCAACTACACGCCCCAGAAGGTCAAGCAGCATTCCTTCTCCGAGACATTCTCCGAATCCTCCTCGGACAGCTCCCATTTGGGCCAGTCTGGTGCGCCGGGGGGATACAAGCAGCAGGAACCCCTGCCCTCCGGGGAGAACCAGTCCAGTCTCTCCAGTCTGGAGAAGCTGATGATGGACTGGAACGAGAGCTCCACGGGCCCCTCTTACAACTGGAACCAGAGCGTCCTCTTTCAAGGGGGCTCCAAGCCTGGTCGCGGGAGGAGGAAAAAGGCTGAACCCCAGGGAGAGGGTCATCACCTCGGGTTCCCTCCGGTCTCCTCTCCCTCCAGTTCCTCCTCACCCGTCCCCGGCCCTAAGCGGAGCGCCATGGGGGCCCGTCAGCCAAGGGGGTCTCGCGGCGGCTTCACCTCTTGCAGGCGGGAGCGTACCACGCTGGGGAAGCCCAAAGCCCAAAAGCCGAATGCCCAGCCTGCGTCTATGGCCCTTTTCCAGGACAGTCCAGACATGGCGGTGGACTATTACAGTGGTGACAGCAGCAGCATGTCCCCTCTTCCTGCCCAGAACCAAAGCTTTGGGCTGGGAGAGCGAGAGCAGTGTGAATACTCCAGCCCCTACTCAGTCAATCCGTCCACCCCGTCCTCAGAGGACAAATTCTCCCAGATGTTTCACAGCgaggcggcctccctctcccccGTGGTGGGTTTGCAGCCCGAGTCCACCAAGCCCTTCCAGTCACCTCCTTCCAAGCCCCCGCACACTTTTGCCGGCCCACCTAAGACCTTTTCCCCCAGCTGTTCCCCGACCCTGGCGTACAAGGAGAGCCCGATGCCCTGCGACACCAGGAGACTCCTCTCCTCCTGCGCTGCCCAGAGCCCCCACCGAGCCAGCAAGGACCTCTCCCAGTACGACTCCCCCAGCTACAGCGGCTCGCCGTACTGGTACCCCCAGGGCAGCTCCTTGGCGGGCAGCCCGCACCACTATGACAAGCGGGACGATTTCGCGGAGCGGGCAGGGGTCAGCCCCCAGCTCCTCGGCTCCATCTCCCTGGGCCGGACTGAGAAGGAGTCCCAGGAGATGGGCCGGGGGCTGTCCCTGAGGGCGGCTGCCCCCCCGTCTCCGTACCCTCCCATCCTGGCATCCTCGTGTGCCGCGACTCTGGACGCTTCCCCCCTTCCCGAAGAGCACAGCCTTCACATGCCCCCCGAGAGCTACCACCCCCGCTATCCGTCCTTCACCTCACATGGGCAGCTGGCGATGGGCACCCCGCTTCACCGAGGCGGAGTGCTGTGCCAGCTTCTCGACCAGCCCACAGAGGACACTTTCACCaaagaaagaaagaacgaaagaaaaaaggacaagAAGAACGAGGAAACGTTTCAAACTCGAAAAAACACACCAACGAGTGAAGACACACCAGTTTGGGTGGAGTGGGGGGGCGGAGTGCGCCGTGTCTGGGAACCAGTGGGAACGGGAGATGGGAGACTTGGCGACGGACACATCCTGGCTCTGCCCATCTCGGCCGCTGTTGACTTCCAGAGCACAAtTCTTCCACTGGGCAGAACTCCCCTTCCCATCATCCTCTGCAGCGTGAGTAAAGTCCTTCAGTCAGCACCGATTGAGCCTGGCAACCAGagcctgcacccccccccccccccaacctcctcctctcctcctctcctcccccctccctccgtCACACGCGTGTCAGAGCCGTGGACTGCAGCTGTACAGTTCATGTGATACCAGCATATGTACATAGACTTCAGAATACAacgaaaaaaacacacacaaaaaacacacgaaaaaaacaagaaaagaggaaaaaacacaggACAAAGAAACGgttattattaagaaaatatgcACTGAAATGATTATTTacgtgaaaagaaaaatatggaaAGGGTTTATGacatatttattgtacataactgttttattttaatctatgtATGGCATATCACGTTTTATCCATCAGATGTGGTTTTGTGGTGTGATTTTtggcatgttttctttttatatagtttttctttaaaaaaattaaataaaataaaatgctgtgcGCACCCCAAagaaattgatttatatatctatatctctatagatggatatatatatataaggaagaacaacaaatatttctaaatgatttttTATGATGATAACTGTTGaactccccctttctctccctgtctgttgTGTAAAGCGATTTTTCTGTGTTGAGGTGATGAATCTCAGGGTGTAGACTGgacttgttcttttctttttctgttcttttttcttttccgaACTCTCAATGTGTTGTAAGGTGGTTTGTGCGATGGAATATTGTATTGTCTGTTACATATCATACATCTGCcgtgcatatatttaaatacacattcaatTGAGACCATTGCTAAATAAA

Function

GO: NA

KEGG:

id description
K22592 AHDC1; AT-hook DNA-binding motif-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128714 lncRNA downstream 33263 3554183 ~ 3559393 (-) False AMCG00010901
TU128685 lncRNA downstream 167887 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 322887 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 431144 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 431759 3160583 ~ 3160897 (-) True G102889
TU128741 lncRNA upstream 172712 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 527075 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 538954 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 540973 4152518 ~ 4152748 (-) True G103095
TU128853 lncRNA upstream 813809 4425354 ~ 4425572 (-) True G103149
AMCG00010902 mRNA downstream 4561 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010901 mRNA downstream 17841 3553986 ~ 3574815 (-) True AMCG00010901
AMCG00010899 mRNA downstream 68079 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010898 mRNA downstream 84661 3499002 ~ 3507995 (-) True AMCG00010898
AMCG00010900 mRNA downstream 96818 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010909 mRNA upstream 404053 4015598 ~ 4020921 (-) True AMCG00010909
AMCG00010910 mRNA upstream 417257 4028802 ~ 4058729 (-) True AMCG00010910
AMCG00010914 mRNA upstream 543486 4155031 ~ 4167037 (-) True AMCG00010914
AMCG00010917 mRNA upstream 678511 4290056 ~ 4291183 (-) True AMCG00010917
AMCG00010919 mRNA upstream 946008 4557553 ~ 4569654 (-) True AMCG00010919
TU128662 other downstream 173480 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 173480 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 265097 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 410037 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 831392 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 558248 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1031107 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1522665 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2093225 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4360079 7971624 ~ 8019522 (-) False G103832

Expression Profile