RNA id: AMCG00010906


Basic Information

Item Value
RNA id AMCG00010906
length 3706
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00010906
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3916289 ~ 3946921 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcCCCTTCCCTTATCAGTGACATCCACGCAGACCGGATCGAACAAAAGGCTGTCACCCTCACATGGCGAGAACCCACCTACTCCGTCAACAATAAGACCGAATACGAAATTAAATATTTCGAAAAGGACCAGAAGGACCAAAGTTACTCCACGGTGAAAACGGCCGCCACCACAGTGACCGTCAACAACCTGAAGCCCGGGACAGCCTACGTCTTCCACATCCGCTCCTTCTCCTCCACCGAATACGGAGCCTACAGTCCCGCAGTGGAAGTGCAGACCCTGGGAGAGCTGGCTCTGGCCTCCAGCGAGCAGAACCCTGTGATCATCATCGTGGTGGTGTCGGTGGCAGCTCTCATCATGCTGATTTCCATGGGCGTGGGTCTCATGATCTGGAGGAGACAATGTGGCTACAGCAAGGCGAGCCAAGATGGGGATGAGGAGCTGTATTTTCAGTTTAAGATTCCAACCAGACGTACATACATAGACCCCGACACCTGTGAAGACCTCATCCAGGCCGTCCATGTCTTTGCCAAAGAACTGGACAACTCCAGcataaaaattgaaagaatcATCACCACAGGTGAATTCGGAGAGGTCTGCAGGGGCTGCCTGAAGCTTCCTAGCAAGAGAGAGCTTCCCGTCGCCATCAAGACCCTGCGATCTGGCTGCTCGGAGAAACAGAAGAGGGTCTTTCTGTCCGAGGCCGGGATACTGGGCCAGTTCGACCATCCCAACATCATCCGCCTGGAGGGGGTCATTACCAGAGGAAACACGATGATGATTGTAGTCGAGTGCATGGCCAATGGAGTCCTGGACTCTTTTCTGAGGAAACACGAGGGCCAGTTCACCGTCATCCAGTTGGTGGGGATGCTTTGTGGAATCGCTTCGGGGATGAAGTACCTCACGGAAATGGGCTACATCCATAAAGGCCTCGCGGCCCACAAGGTGCTGGTGAACAGCAGCCTGGTGTGCAAGGTGTCCGGGTTCAGACCGTCGGAGGAGGAGAAGATCGAGGCCGTGTACACGACCCTGCACGGAGGCAAGAGCGCGGTCCTGTGGACGGCGCCAGAAGCCATCCAGTACCACCGGTTCAGCTCGGCGTCCGACGTGTGGAGCTTCGGCATCGTCATGTGGGAAGTCATGTCTTACGGCGAGAGACCGTACTGGGACATGTCCAACCAGGACGTCATTAAAGCTATCGAAGACGGCTTCCGCTTGCCCGCGCCCATGAACTGTCCCACCCCACTCCACCAGCTGATGCTGGACTGCTGGCAGAAGGACCACAACGACAGGCCGAAATTTGCACAAATCCACAGCATCCTCAACAAGACGGTCCGCAATCCCGACAGCGTGAAAACATCCACGATCGCCCGCACGAGGACTCTGAGTACCTCCATCCCGCTGACGGAGCGCACCTTCTCCTCCTTCCCCAGCTTCAACTCTGTGGGGGAGTGGCTGGAGGCGTTCGAGATGGGCAGGTACAAAGACAACTTCACAGCAGCGGGCTACTGCTATCTGGAGGCGGTGGCGCGAATGACAGTCCAGGACGTGATGAGCCTGGGGATCACCTCGCTGGATCACCAGAAGCAGATCTTGACTGCGATCCAGACTTTGAGGGCGCAGGTCATACAGATGCACGGCCGGGGGGTGCAGGTGTAGCCCCGACGGACCCGCGCGACGGACTCTGAGGTGACGGAATGAAAACAGAACAGGATCAAACTGCCACGGGTCGCTGGCAGCATGTTTACAGACCGAAAAACGCCCTGGAgatgccccccctccccagtcGGACATCCGGCGGAGAGAATCGGTGAGCTGGCAGGCCCCCGGAGTCGGCCGAGGTCACCGGGGCAAGCCTCGCCCAGCCGCTTCTGGCCCAGTTCTCTTTCCGCCCCAGTACGGACAGCATCCTTAACCCGTCCCGTATTGGCAACGGCCCGTTCTTGTACACTTCATTTCCACCGCGGCTCCGGGGTTGACCTAGGGATGTCAGAGGTTAACAGTCTGGTGTAACGGTGTGCGTTGGGCTTGGAGGAGCCGAGTGTCGTGGGATTTGTGCTGTATTGGGTTTGGGTGTGTTGAATGTCTGAACGGAAAACGCCGAGGTATGTGAAGAAAACAGTTCAttctctgcttttgttttctgacatttttaattCCAGAACTGAATTTACATTTAAGTTGTTGTCGTTGTCTTGTGGTTGTAGCAGATTTTTGGTTTGTCACTCCAACACCTTTATTGGACAGTTTTGTTTCTCCAGTATTCTGTGTTTAAGATGGTTTCTCTTCTCTCCAGACCACAAAATCGGAGATTTTTCATGACATTTCCACACACGACATattgaactttaaaaaaaaataatacactgtcGACTCTGGaactaaaatatgtttctttttgcaACCGGTCACACGTAGGCGCTGCCTAAATCAAATCCGTTATGGCTCTGTGTGCGCGCATAATGAATGTGCCTTGTAAATTTGCaagtacatgtttttaaatgcccTACCAatccatcactctctctctccccggaGACCATTAACCTTTTATGCAAGCCAAGCCATCTGGATTTGCATTTATGAGCCTTGCATAGATAGGTggttaataaaactgaaaacgtGCAGCAGTGATTATGATCGCAGTATGGACCAGGATGGggttttttatgtgttttctaAAGGGATTGAAAGAATTTAATAAAAACCTAAAGGTAAAAATAACTTCACActgatttcaaaatgttttgcctAAACTGGGTATATTGATCAAAAGCAGTGCAAGGACTAAGGTGAGGTCATTGCCCCACCCCCAAATGGGAGTGGCTTGTACCAGAGGGGCTATGCTAATTTAATAATTGGCTTTACTGATTCGTCATCAAGTTACTGATGAGTGGGAGGTGACATTTGTTGACCAATCACCCGTTAGTGGCTGCCGACAGTCAAACCAGAGCACTCGGccgttttttatttaaaagaaaatgtccaCGCATGCAGGAGACGCTGCCGTGTTCATATTAGTTGACCATCACACTACATCAGCCCCCTTTATCCCACACGAAGAGGAGGAACACAAAGCAGTGGGGACGTGTCTCGAGCTGTAGTTTTATTTCGTTTCACTGGGTGTTTGTTCTTCATCCTATAAAAAAAGGTGGTCAATTAAACCAGACATTAATGTTTAAGAATATGAGCCGATATCTTTCTATCCATCTACCTGTATATTTAtctgtctatatttatttgactgtttgcctatttatataaattatactcgcattgtattttctgttcatGTTCACTTTATACCCTTCGACTTTATCCTCAGTCTGTGTCTTTCACCACTGTGTATGAATGCAGTAATATTCAAAGTAGCTCATGCAGcatcaaaatgaaacaaagtcTTCTGTTTCCCCCCAGTGTCGGCCTTTGCCACCTGTGCTTTGCCTATATTAATCAGCAAGGACTGCACTTTCTGACAAATGACCATAATAACACGCAGGCCTAATCATGAAAGGGTAACATTTGCAAGCCATTAGTCATGTGAGCGCAGCAGGAAGACGGAAATTGGCAAGAACACGTAATACAACATTAATTGTGGACAGCTGCCTAAAATACAGTATTCTTTTCTTATATTTGCTAAATATATACCTTTTGTTAcctattgttaatttaaaatatgtatttttttttaaatacagcaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128721 lncRNA upstream 322882 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 453786 3459862 ~ 3462503 (+) True G102959
TU128615 lncRNA upstream 458632 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 483142 3432815 ~ 3433147 (+) True G102944
TU128478 lncRNA upstream 812647 3099921 ~ 3103642 (+) True G102860
TU128775 lncRNA downstream 103017 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 341102 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 490956 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 589416 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA downstream 589416 4536337 ~ 4594648 (+) False G103152
AMCG00010907 mRNA upstream 22723 3889963 ~ 3893566 (+) True AMCG00010907
AMCG00010905 mRNA upstream 81240 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010903 mRNA upstream 239199 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010897 mRNA upstream 365838 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010887 mRNA upstream 476780 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010908 mRNA downstream 74140 4021061 ~ 4024002 (+) True AMCG00010908
AMCG00010913 mRNA downstream 191746 4138667 ~ 4150872 (+) True AMCG00010913
AMCG00010911 mRNA downstream 220257 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010912 mRNA downstream 224562 4171483 ~ 4176000 (+) True AMCG00010912
AMCG00010915 mRNA downstream 273781 4220702 ~ 4228928 (+) True AMCG00010915
TU128716 other upstream 336012 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 472755 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 487860 3426499 ~ 3428429 (+) False AMCG00010888
TU128579 other upstream 517783 3371053 ~ 3398506 (+) False G102921
TU128774 other downstream 103017 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 691511 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2695062 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 2970845 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 4601442 8548363 ~ 8552605 (+) True G103939

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000082_00746517_00799450.mRNA True 2859 mRNA 0.54 16 CI01000082 746517 ~ 799450 (+)