RNA id: AMCG00010907



Basic Information


Item Value
RNA id AMCG00010907
length 624
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00010907
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3889963 ~ 3893566 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTACTCCGGTGTAGACAGATGCTCCCTGCGATACCTGCGGCCGCTCTCCGCTTGTCCCACGGGCTCCTACAAGATGTCAACCCGGCAGCAGGAGTGCTTCCCCTGCCCCGAACACAGCTTCACGGACGAGGAGGGCTCCGTCCTGTGCGTCTGTGAGGAGGACTACTACCGGACACCCCTGGATTCCCCTTCATCGGCATGTACAAGGCCTCCGTCTGCTCCCAGAAACCTGGTCTACAGCGTGAAGCAGTCGACTCTCATCATCGAGTGGGACCCTCCCTCGGACATGGGGGGCAGAGCGGACATCGCCTACAGCATCGTGTGCACCAGGTGCACCGGGGCCGCCGGGCGGTGCGAGCCGTGCGGCGGCAGTGTGGGCTTCGTGCCGCAGCAGAGCGGGCTGCTGGACCGCACCGTCACCGTGGTCAACCTTGCACCGCACACCAACTACACCTTCCGGGTGGAGGCCCTGAACGGCGTCTCGGACCTTGCTACGGGCTGGAGTCAGGCCAGGGAATCTGCATCCTACCTGTTCACTGAAGAGGAGGATGGCCTCAAATCAAGAGGCGGCGATGCGTTCTGCCGTACGGTTTCATTCCCACCCAGAGACGGGagcaTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128721 lncRNA upstream 296556 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 427460 3459862 ~ 3462503 (+) True G102959
TU128615 lncRNA upstream 432306 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 456816 3432815 ~ 3433147 (+) True G102944
TU128478 lncRNA upstream 786321 3099921 ~ 3103642 (+) True G102860
TU128775 lncRNA downstream 156372 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 394457 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 544311 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 642771 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA downstream 642771 4536337 ~ 4594648 (+) False G103152
AMCG00010905 mRNA upstream 54914 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010903 mRNA upstream 212873 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010897 mRNA upstream 339512 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010887 mRNA upstream 450454 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010888 mRNA upstream 462932 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010906 mRNA downstream 22723 3916289 ~ 3946921 (+) True AMCG00010906
AMCG00010908 mRNA downstream 127495 4021061 ~ 4024002 (+) True AMCG00010908
AMCG00010913 mRNA downstream 245101 4138667 ~ 4150872 (+) True AMCG00010913
AMCG00010911 mRNA downstream 273612 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010912 mRNA downstream 277917 4171483 ~ 4176000 (+) True AMCG00010912
TU128716 other upstream 309686 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 446429 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 461534 3426499 ~ 3428429 (+) False AMCG00010888
TU128579 other upstream 491457 3371053 ~ 3398506 (+) False G102921
TU128774 other downstream 156372 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 744866 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2748417 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 3024200 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 4654797 8548363 ~ 8552605 (+) True G103939

Expression Profile